DreEX6078630 @ danRer10
Exon Skipping
Gene
ENSDARG00000036864 | slc34a2b
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030709-1]
Coordinates
chr23:1072038-1074860:+
Coord C1 exon
chr23:1072038-1072233
Coord A exon
chr23:1073777-1073872
Coord C2 exon
chr23:1074740-1074860
Length
96 bp
Sequences
Splice sites
3' ss Seq
GTTTGTCTTTGCTCTTCCAGCTG
3' ss Score
10.64
5' ss Seq
ACGGTGAGC
5' ss Score
9.44
Exon sequences
Seq C1 exon
GGCTTTTGCGGGGGCGACGGTGCATGACTTCTTCAACTGGCTGTCGGTGCTGGTGCTCCTGCCTCTGGAAGTGGCCTCAGGGATGCTCTACAGACTCACCAAACTTGTGATCGATTCCTTCAACATCCAGACGGGCGCAGACGCTCCAGACCTGCTGAAAGTCATCACAGAGCCGCTCACCAAGAACATCATTGAG
Seq A exon
CTGGACACCTCTGTGATTCGTGACATCGCCACTGGAGACCCTGCTGCCCGAAACAAAAGTTTGATCAAGATCTGGTGTAAAACGGAAAAAATTACG
Seq C2 exon
AACCTGGTGAACGTGACCGTCCCGGGAATCGCAAACTGCACTCCGGACGCCCTGTGCTGGGTGGATGGAGACTTGATCTGGACCCAAAAGAACCAAACCGATACCATCTACTTGAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036864-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(26.4=56.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTTCAACATCCAGACGGG
R:
TGGGTCCAGATCAAGTCTCCA
Band lengths:
168-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]