RnoEX6042534 @ rn6
Exon Skipping
Gene
ENSRNOG00000004626 | Slc34a2
Description
solute carrier family 34 member 2 [Source:RGD Symbol;Acc:620889]
Coordinates
chr14:60261779-60263431:-
Coord C1 exon
chr14:60263236-60263431
Coord A exon
chr14:60262392-60262487
Coord C2 exon
chr14:60261779-60261899
Length
96 bp
Sequences
Splice sites
3' ss Seq
TACCTCCTTGTTCCCCTCAGCTG
3' ss Score
8.09
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGCATTTGCAGGAGCTACTGTCCATGACTTCTTCAACTGGCTCTCTGTGTTGGTGCTCTTACCTCTGGAGGCTGCCACCCATTACCTGGAGAAACTGACCAACCTTGTGTTGGAAACCTTCAGCTTCCAGAATGGAGAAGATGCCCCAGACATTCTGAAAGTCATAACAGACCCCTTCACAAAGCTCATCATCCAG
Seq A exon
CTGGATAAAAAAGTCATCCAACAAATTGCAATGGGTGACTCAGAAGCCCAGAACAAGAGCCTGATCAAGATCTGGTGTAAAACTATAAGCAATGTG
Seq C2 exon
ATTGAGGAGAATGTCACTGTCCCCTCGCCTGATAACTGCACCTCTCCTTCATATTGCTGGACTGATGGCATACAGACCTGGACCATCCAGAATGTGACCGAGAAGGAGAACATTGCTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004626-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(28.5=62.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAATGGAGAAGATGCCCC
R:
CGGTCACATTCTGGATGGTCC
Band lengths:
170-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]