DreEX6030783 @ danRer10
Exon Skipping
Gene
ENSDARG00000012903 | slc34a2a
Description
solute carrier family 34 (type II sodium/phosphate cotransporter), member 2a [Source:ZFIN;Acc:ZDB-GENE-000524-1]
Coordinates
chr1:13751673-13752352:+
Coord C1 exon
chr1:13751673-13751868
Coord A exon
chr1:13752086-13752181
Coord C2 exon
chr1:13752268-13752352
Length
96 bp
Sequences
Splice sites
3' ss Seq
ATTAATGTTTTATCTTTCAGCTG
3' ss Score
9.76
5' ss Seq
ACGGTAATG
5' ss Score
6.53
Exon sequences
Seq C1 exon
GGCATTTGCAGGAGCCACTGTGCATGATTTCTTTAACTGGCTCTCAGTCCTGGTGCTGCTGCCTCTGGAAGTGGCCTCGGGTTACCTGGTCAAGGTTACGAGCCTCATCGTGAAATCGTTTAACATAGAGAGTGGAGAAAATGCACCAGCTCTCCTAAATGTTATCACCGATCCGCTCACCCACTCAATCATTCAG
Seq A exon
CTGGACGAGACTGTGATAAGCGGCATTGCGGTTGGCGATCCCGAAGCCAGAAATAAATCTCTTATCAAGGTCTGGTGCCACACAGCCTCAAACACG
Seq C2 exon
ACTCTCCAGAATGTGACCACAACAAACTGCACTGATCTTTGTTGGGAATTGAAGAATGTTACAGAAATTATAAATATTAAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012903-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0269010=Na_Pi_cotrans=PD(28.0=60.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAGTGGCCTCGGGTTA
R:
TCAGTGCAGTTTGTTGTGGTCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]