BtaEX6031000 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:63054794-63060262:-
Coord C1 exon
chr6:63060193-63060262
Coord A exon
chr6:63058537-63058664
Coord C2 exon
chr6:63054794-63054905
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATTTACAAATTTCTAAACAGGGC
3' ss Score
7.99
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
TGAGCCCCAGGCCATGTGCTACATTGAAACATCCAACTTAGATGGTGAAACAAACCTGAAAATTAGACAG
Seq A exon
GGCTTACCAGCAACATCAGATATAAAAGACATTGACAGTTTGATGAGACTGTCTGGCAGAATTGAGTGTGAAAGTCCAAACAGACATCTCTATGATTTTGTTGGAAACATACGGCTTGATGGACGCAG
Seq C2 exon
CACTGTTCCCCTGGGAGCAGACCAGATTCTTCTGCGAGGTGCTCAATTGAGAAATACACAGTGGGTTCATGGAATAGTTGTCTACACTGGACATGACACCAAGCTAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(8.5=100)
A:
PF0012215=E1-E2_ATPase=FE(15.4=100)
C2:
PF0012215=E1-E2_ATPase=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGCCATGTGCTACATT
R:
CTGCATTAGCTTGGTGTCATGT
Band lengths:
178-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]