RnoEX0013423 @ rn6
Exon Skipping
Gene
ENSRNOG00000034200 | Atp8a1
Description
ATPase phospholipid transporting 8A1 [Source:RGD Symbol;Acc:1309619]
Coordinates
chr14:42045528-42052327:+
Coord C1 exon
chr14:42045528-42045597
Coord A exon
chr14:42046868-42046995
Coord C2 exon
chr14:42052216-42052327
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATTTGGGAATGTGCCAACAGGGT
3' ss Score
3.94
5' ss Seq
TGGGTATGT
5' ss Score
7.43
Exon sequences
Seq C1 exon
TGAGCCCCAGGCCATGTGCTACATCGAGACATCCAACTTAGATGGTGAAACCAACCTGAAAATTAGACAA
Seq A exon
GGTTTACCAGCAACATCGGATATCAAAGACATTGACAGTTTAATGAGAATTTCTGGCAGAATCGAGTGTGAAAGCCCAAACCGACATCTCTATGATTTTGTTGGGAACATAAGGCTTGATGGACATGG
Seq C2 exon
CACGGTTCCCCTGGGAGCAGACCAGATCCTTCTTCGAGGGGCTCAGTTGAGAAACACTCAGTGGGTTCACGGGATAGTTGTCTACACTGGACACGACACCAAGCTGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034200-'9-12,'9-11,10-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(11.3=100)
A:
PF0012215=E1-E2_ATPase=FE(20.6=100)
C2:
PF0012215=E1-E2_ATPase=FE(18.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGGCCATGTGCTACAT
R:
CTGCATCAGCTTGGTGTCGT
Band lengths:
178-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]