DreEX6059082 @ danRer10
Exon Skipping
Gene
ENSDARG00000063001 | atp8a1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:ZFIN;Acc:ZDB-GENE-060929-36]
Coordinates
chr14:46006659-46009638:+
Coord C1 exon
chr14:46006659-46006728
Coord A exon
chr14:46006853-46006980
Coord C2 exon
chr14:46009527-46009638
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGTTATCACACACAGGGT
3' ss Score
7.33
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
TGAACCTCAAGGAATGTGCTACATTGAGACTTCAAATCTGGACGGAGAAACCAATCTCAAGATCAGACAG
Seq A exon
GGTCTGACGATCACCACAGACATTAAGGACATTGACGGTCTAATGCGTCTCTCTGGGCGGATGGAGTGTGAGAGTCCGAACAGACACCTGTATGAGTTTGTGGGTAATATTCGCCTGGATGGACACGG
Seq C2 exon
CACCGTACCACTGGGTCCGGATCAGATCCTGCTGCGAGGAGCTCAACTCAGGAACACACAGTGGGTGCACGGCATTGTGGTTTATACAGGACACGATACCAAACTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063001-'6-7,'6-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(10.0=100)
A:
PF0012215=E1-E2_ATPase=FE(18.3=100)
C2:
PF0012215=E1-E2_ATPase=FE(16.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCTCAAGGAATGTGCTACA
R:
GCATGAGTTTGGTATCGTGTCCT
Band lengths:
180-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]