BtaEX6031069 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002199 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr6:68119311-68176596:-
Coord C1 exon
chr6:68176452-68176596
Coord A exon
chr6:68163790-68163990
Coord C2 exon
chr6:68119311-68119518
Length
201 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTTTGATCTTTCAGGAA
3' ss Score
11.53
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTCTTGGGAGCTGATGATGATAACATGGGTGGTGGCTGCTCTCGGAAGCTGACCACTGTGAATATTCTTCGTTTCCTCTTGCTGGTCCTGATTCCATGTATCTGTGCTCTCATTGTCTTGCTGGTGATCCTGCTCTCCTTTGTTG
Seq A exon
GAACATTAAAAAAGGCCTATTTTAAATCAAATGGGAGTGAACCTTTGGTCACTGATAGTAAAGTCCACGTGTCTGATGTTATTCTTAATACAACTTATAACGACGAGAGCACTGTGACATCTGCTGCCCATCCCACCCAACACATTCCAGCCTGGACTATGGATGCTTCTCTCTCAGCAGACCAGAATCACAGGAACACAA
Seq C2 exon
GTGCCTGCATGAACATCACCCACAGCCAGTGTCAGATATTGCCCTACTACACCACGCTGACATCTCCCCTCTCCATTGTCAAAAGCATGGAAATGGAGAAGTTCCTCAAATTCTTCACGTACCTCCATCGCCTCGGTTGCTATCAACATATCATGCTTTTTGGCTGCAGCCTGGCCTTTCCCAAGTGCATCAGGGATGGTGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002199-'0-2,'0-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139217=Fz=PU(56.3=95.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGCTGACCACTGTGAAT
R:
CCCTGATGCACTTGGGAAAGG
Band lengths:
298-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]