RnoEX0023847 @ rn6
Exon Skipping
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38293298-38318486:+
Coord C1 exon
chr14:38293298-38293439
Coord A exon
chr14:38308371-38308565
Coord C2 exon
chr14:38318386-38318486
Length
195 bp
Sequences
Splice sites
3' ss Seq
TATGCATTTTTGTCTTTCAGGAA
3' ss Score
11.6
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTCTTGAGAGCAGACAGCAGCGTGGGCGAGGGCTGTCCTCAGAAGCTGGTGACAGCAAATTTGCTACGCTTCCTCCTGCTTGTGCTCATCCCCTGCATCTGCGCCCTTATCGTGCTGCTGGCCATCCTGCTGTCCTTCGTGG
Seq A exon
GAACATTAAAGAAGGTTTATTTCAAATCAAATGACAGTGAACCTTTGGTCACTGATGGTGAAGTTCGAGTGCCTGGTGTTATCCATGTAAATAGATATGAGAACACAGGGGCGCCCTCTATGCCCCCCAGCCAATCCATTCCTGCCTGGACACCTAGAGCTCCTTCTCTAGAGGACCAGAGTCACGGAAATACAA
Seq C2 exon
TGGAAAATCTACTTTGAGTTGGGAAATTTTTCTCCTGCTCTGGCAGAGTGCAATACTATGTTCTCCTGTGATTCTGGGCAGTGGCGAAACCTGAGCTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302-'5-3,'5-2,7-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTGTCCTCAGAAGCTG
R:
GAGCTCAGGTTTCGCCACTG
Band lengths:
212-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]