MmuEX0012468 @ mm10
Exon Skipping
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72435235-72471990:-
Coord C1 exon
chr5:72471849-72471990
Coord A exon
chr5:72454306-72454506
Coord C2 exon
chr5:72435235-72435442
Length
201 bp
Sequences
Splice sites
3' ss Seq
ATATGTGTTTTGTCTTTCAGGAA
3' ss Score
12.61
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTCTTGAGAGCAGACAGGAGCGTGGGCGAGGGCTGTCCTCAGAAGCTGGTGACTGCTAACTTGCTGCGCTTCCTCCTGCTGGTGCTCATCCCCTGCATCTGCGCCCTCATCGTGCTGCTGGCCATCCTGCTGTCCTTTGTGG
Seq A exon
GAACATTAAAAAGGGTTTATTTCAAATCAAATGACAGTGAACCTTTGGTCACTGATGGGGAAGCTCGAGTGCCTGGTGTTATTCCTGTAAATACAGTTTATTATGAGAACACAGGGGCGCCCTCTCTGCCCCCCAGCCAGTCCACTCCAGCCTGGACACCGAGAGCTCCTTCTCCAGAGGACCAGAGTCACAGGAACACAA
Seq C2 exon
GCACCTGCATGAACATCACTCACAGCCAGTGTCAAATTCTGCCCTACCACAGCACGTTGGCACCTCTCTTGCCAATTGTCAAAAACATGGACATGGAGAAGTTCCTCAAGTTCTTCACGTACCTCCATCGCCTCAGTTGCTATCAACATATCCTGCTCTTCGGCTGTAGCCTCGCCTTCCCTGAGTGCGTTGTTGATGGCGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.353 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139217=Fz=PU(55.8=95.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACTGCTAACTTGCTGC
R:
CATCAACAACGCACTCAGGGA
Band lengths:
294-495
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types