DreEX0003051 @ danRer10
Exon Skipping
Gene
ENSDARG00000101281 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr23:44137901-44153561:+
Coord C1 exon
chr23:44137901-44138356
Coord A exon
chr23:44149156-44149419
Coord C2 exon
chr23:44153351-44153561
Length
264 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGCGTGTTTGTCCAGGTC
3' ss Score
8.76
5' ss Seq
CTGGTACGA
5' ss Score
7.84
Exon sequences
Seq C1 exon
CTCCTGCACAAGCTGGAAACTCTGAAGTGAAATACCTGTGTAAAAATAGCCCGCGGGAGCGCGTCTGCTCGCCGTGTCTGATGGTCCGGATCCTCCGTGATCTGCTGCCGTTAACCGGAGGTAAAACTTCACCGTATTTTTCACAACATGTCGTTTCTGTCCATTTCTGTTGGTTATTGTACCGTGTGACTGTCGGTTAACGTTAATAATACCTTCAGCTTTGATGGATGTTCAGAATAGCGCTCGAGTTCTGTCTGCTGCCACTGATCAACTCTCTATGTGTGTGTGTGTGTGTGTTTTCTCAGGTGTGTGTGTGTGTATCGGATGAGCTGATGATGGGTGAAGCGTTCACACACACTCAGCGCTGCGGGAAACATCTGCGACTGCTGCTCTTCATCCTGCTGCCGTGTGTGTGTGTCCTCATCTGTGTGTGCGTGCTGCTGCTGACGCTCACAG
Seq A exon
GTCTGTTTGGGAATAATGGCCTGCTAGATGCCGGAGCTTTTGTCTCCATAGCGACGCTCCCTCCGCCGGCCTTTAACGACAGTGACTCCCGCCTGATGACTGCTGATAATGGGACAGTGGCGGTGCCGACGGACGCTCCTCTGCAGTGGGACTCGACTCTCTGGATGCCCCGCGCCGACACGTCTCCATCCGCAAGTCCCACTGCTGTTTCTGTGGACTGGTGGACATCCACATCCACGGTGACCAGTCTGAATGCCGAGCCTG
Seq C2 exon
GTATCTGCTCTGACATCACGGAGAGCCAGTGTAACATGCTGCCGTACAACCAGAGCGGTGTGATGGTGGGCCGCAGTGTGGTGAAGAGCAGCGAACTGCAGATGTTCCTTAAGTTCTTCAGCTACCTGAGCCGCCTGTCCTGCTACAGACACATCATGCTGTTCGGATGCTCCATCGCACTCCCACAATGCATCAGCCACAGAGACGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101281_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139217=Fz=PU(56.7=95.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGACTGTCGGTTAACGT
R:
TACACTGGCTCTCCGTGATGT
Band lengths:
307-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]