Special

MmuEX0012468 @ mm9

Exon Skipping

Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72826474-72863229:-
Coord C1 exon
chr5:72863088-72863229
Coord A exon
chr5:72845545-72845745
Coord C2 exon
chr5:72826474-72826681
Length
201 bp
Sequences
Splice sites
3' ss Seq
ATATGTGTTTTGTCTTTCAGGAA
3' ss Score
12.61
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTCTTGAGAGCAGACAGGAGCGTGGGCGAGGGCTGTCCTCAGAAGCTGGTGACTGCTAACTTGCTGCGCTTCCTCCTGCTGGTGCTCATCCCCTGCATCTGCGCCCTCATCGTGCTGCTGGCCATCCTGCTGTCCTTTGTGG
Seq A exon
GAACATTAAAAAGGGTTTATTTCAAATCAAATGACAGTGAACCTTTGGTCACTGATGGGGAAGCTCGAGTGCCTGGTGTTATTCCTGTAAATACAGTTTATTATGAGAACACAGGGGCGCCCTCTCTGCCCCCCAGCCAGTCCACTCCAGCCTGGACACCGAGAGCTCCTTCTCCAGAGGACCAGAGTCACAGGAACACAA
Seq C2 exon
GCACCTGCATGAACATCACTCACAGCCAGTGTCAAATTCTGCCCTACCACAGCACGTTGGCACCTCTCTTGCCAATTGTCAAAAACATGGACATGGAGAAGTTCCTCAAGTTCTTCACGTACCTCCATCGCCTCAGTTGCTATCAACATATCCTGCTCTTCGGCTGTAGCCTCGCCTTCCCTGAGTGCGTTGTTGATGGCGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220-'2-4,'2-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.338 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
PF0139217=Fz=PU(55.8=95.7)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000005352





     
                   









    
Main Skipping Isoform:
ENSMUSP00000135511





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000127389, ENSMUSP00000130220, ENSMUSP00000135722, ENSMUSP00000135889
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr4:47786725-47786925 
ALTERNATIVE
HsaEX0016848
(CORIN)
Human
(hg19)
chr4:47788742-47788942 
ALTERNATIVE
HsaEX0016848
(CORIN)
Rat
(rn6)
chr14:38308371-38308565 
HIGH PSI
RnoEX0023847
(Corin)
Cow
(bosTau6)
chr6:68163790-68163990 
ALTERNATIVE
BtaEX6031069
(CORIN)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr23:44149156-44149419 
HIGH PSI
DreEX0003051
(CORIN)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGGTGACTGCTAACTTGCTGC

				
R: 
CATCAACAACGCACTCAGGGA

				
Band lengths: 
294-495

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"