BtaEX6031073 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002199 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr6:67998897-68010629:-
Coord C1 exon
chr6:68010513-68010629
Coord A exon
chr6:68007126-68007233
Coord C2 exon
chr6:67998897-67999128
Length
108 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTCTCTCTTCTGTAGGTC
3' ss Score
12.87
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
Exon sequences
Seq C1 exon
CGTGTCACAGCCAGGGTCTGGTGGAATGCAGAAATGGACAGTGCATCCCCAGCACTTTCCAGTGTGATGGAGACGAGGACTGTAAGGATGGAAGTGATGAGGAGAGTTGCAGTGATG
Seq A exon
GTCAGACTCTGTGTCAAGAAGGAGACCAAAGATGCCTCTACAGTTCCTGCCTTGATTCATGTGGTGGTAACTCTCTTTGTGACCCCAGCAACAGTGTGAATAATTGTA
Seq C2 exon
GTCAGTGTGAACCAATTACGTTGGAACTCTGCTTGAATTTGCCCTACAACCATACAAATTTTCCGAATTACCTTGGCCACAGGACTCAAAAGGAAGCATCCATCAGCTGGGAGTCTTCTCTTTTCCCTGCACTTGTTCAAACCAACTGTTACAAATACCTCATGTTCTTTGCTTGCACCATCTTGGTACCAAAGTGTGACGAGGATACACAGCAGCGTATCCCGCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002199-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.5)
A:
NO
C2:
PF0139217=Fz=PU(64.1=96.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTCTGGTGGAATGCAGAA
R:
TGGTTTGAACAAGTGCAGGGA
Band lengths:
249-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]