RnoEX6042313 @ rn6
Exon Skipping
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38417873-38429984:+
Coord C1 exon
chr14:38417873-38417989
Coord A exon
chr14:38421728-38421835
Coord C2 exon
chr14:38429753-38429984
Length
108 bp
Sequences
Splice sites
3' ss Seq
GGGCTTTTCCCCTTCCACAGGTC
3' ss Score
10.72
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
CTTGTCCCAGCCAGGGCCTTGTGGAATGCAGAAGTGGACAGTGCATCCCTAGCACCTTCCAGTGTGATGGGGACGAAGACTGTAAGGACGGGAGTGACGAGGAGAACTGCAGTGACC
Seq A exon
GTCCGACACCGTGTCCTGGAGGAGATCGGGGTTGCCTTGACAGTTCCTGTGTCGAATCCTGTGCTGGTAGCTCTCTGTGTGACTCAGACAGCAGCCTGAGTAACTGCA
Seq C2 exon
GTCACTGTGAGCCCATCACTTTGGAACTCTGCATGAATTTGCCCTACAACCTTACACATTATCCAAATTACCTTGGCCACAGAACTCAAAAGGAAGCGTCCATCAGCTGGGAGTCAGCTCTCTTCCCTGCCCTTGTACAAACCAACTGTTACAAATACCTCATGTTTTTCGCTTGCACCATTTTGGTTCCAAAGTGTGATGTGAATACAGGCCAGCGCGTCCCGCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302-'21-13,'21-12,22-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=90.0)
A:
NO
C2:
PF0139217=Fz=PU(64.1=96.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGACGAGGAGAACTGCAGT
R:
CGCTGGCCTGTATTCACATCA
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]