MmuEX6018023 @ mm9
Exon Skipping
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72734125-72748231:-
Coord C1 exon
chr5:72748115-72748231
Coord A exon
chr5:72745109-72745216
Coord C2 exon
chr5:72734125-72734356
Length
108 bp
Sequences
Splice sites
3' ss Seq
GGGTTTTTCCCCTTCCATAGGTC
3' ss Score
10.85
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
CTTGTCACAGCCAGGGCCTGGTGGAATGCAGAAGTGGACAGTGCATCCCTAGCACCTTCCAGTGTGATGGGGACGAAGACTGTAAGGATGGGAGTGACGAGGAGAACTGCAGTGACA
Seq A exon
GTCAGACGCCATGTCCAGAAGGAGAACAGGGATGCCTTGGCAGTTCCTGCGTCGAATCCTGTGCTGGTAGCTCTCTGTGTGACTCAGACAGCAGCCTGAGTAACTGCA
Seq C2 exon
GTCAATGTGAGCCCATCACTTTGGAACTCTGCATGAATTTGCCCTACAACCATACACATTATCCAAATTACCTTGGCCACAGAACTCAAAAGGAAGCGTCCATCAGCTGGGAGTCATCCCTTTTCCCTGCCCTTGTACAAACCAACTGTTACAAATACCTCATGTTTTTCGCTTGCACCATTTTGGTTCCAAAGTGTGATGTGAATACAGGACAACGCATCCCGCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.5)
A:
NO
C2:
PF0139217=Fz=PU(64.1=96.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATGGGAGTGACGAGGAG
R:
CGGGATGCGTTGTCCTGTATT
Band lengths:
258-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: