GgaEX0020882 @ galGal3
Exon Skipping
Gene
ENSGALG00000014144 | F1NZW6_CHICK
Description
NA
Coordinates
chr4:68605510-68614511:+
Coord C1 exon
chr4:68605510-68605626
Coord A exon
chr4:68608922-68609020
Coord C2 exon
chr4:68614280-68614511
Length
99 bp
Sequences
Splice sites
3' ss Seq
GTAAATTTCTATTTTCTCAGGTC
3' ss Score
7.24
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
CTTGTCATAGTCAGGGTCTGGTAGAGTGCAAAAATGGACAGTGCATTCCTAGTGCGTTCAAGTGTGATGGAGATAAGGACTGTAAAGATGGAAGTGATGAAGAAAACTGCAGTGAAA
Seq A exon
GTCAAACCCTCTGTCAGGAGGGAGACCAGAGATGTACTTCCTGTCCTGATCCATGTGGAACTTCTCTCTGTGAGATGAGAAACAGCCAGACAAACTGCA
Seq C2 exon
GTCAGTGTGAACCAATTACTCTGGAACTCTGTATGAACTTGCCTTACAACTACACTAGTTACCCAAACTACCTGGGGCACAGGACTCAGAAAGAAGCTTCTGTCAGTTGGGAGTCTTCTCTCTTCCCAGCCTTGGTTCAGACCAACTGCTACAAGTACCTTATGTTTTTCGCCTGTACAGTCTTAGTACCAAAATGTGACCCCCATACAAATCAACGGATCCCACCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014144-'9-12,'9-10,10-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=92.5)
A:
NO
C2:
PF0139217=Fz=PU(64.1=96.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTGCATTCCTAGTGCGT
R:
TCTTTCTGAGTCCTGTGCCCC
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]