DreEX0003047 @ danRer10
Exon Skipping
Gene
ENSDARG00000101281 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr23:44166215-44170071:+
Coord C1 exon
chr23:44166215-44166337
Coord A exon
chr23:44167988-44168086
Coord C2 exon
chr23:44169840-44170071
Length
99 bp
Sequences
Splice sites
3' ss Seq
CACTTTTCTCTATCTCTTAGTCC
3' ss Score
8.39
5' ss Seq
GCAGTGAGC
5' ss Score
3.29
Exon sequences
Seq C1 exon
CGTGTAAGTCCCAGGGTTTAGTGGAGTGTAAGAACAAGCAGTGTATTCCCAGTGCCTTTCGATGCGATGGTGAAGATGACTGTAAAGATGGCAGCGATGAAGAGAACTGCACACAGCAGCACA
Seq A exon
TCCAGGGTTTGTGTCCTTCTGGCCAATCCGGCTGTTCTTCCACCTCCTGCTGTCCTGGAAACACATCATGTGACCTGCGCACCGCCGGCAACAACTGCA
Seq C2 exon
GCGACTGCGAGCCCATTTCTCTGGAGATCTGCATGAATCTGCCTTATAACACCACCCGCTTTCCCAACTATCTGGGTCACCAGTCTCAGAAGGAGACGTCCGTCAGCTGGGAGTCCTCACTCTTTCCTGCCCTCGTTCAGACCAACTGCTACAAATATCTCATGTTCTTTGCGTGTACGGTGTTGGTGCCGATGTGTGACCCTGTGACACAGCAGAGAGTGCCGCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101281-'10-9,'10-8,11-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=88.1)
A:
NO
C2:
PF0139217=Fz=PU(64.1=96.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCGATGAAGAGAACTGCA
R:
GAACGAGGGCAGGAAAGAGTG
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]