BtaEX6031081 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002199 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr6:67935403-67953407:-
Coord C1 exon
chr6:67953233-67953407
Coord A exon
chr6:67937586-67937857
Coord C2 exon
chr6:67935403-67935554
Length
272 bp
Sequences
Splice sites
3' ss Seq
CTCTTGAATCATCATTTTAGGAG
3' ss Score
7.38
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ACTGTGGGCGCCGCCCTGCTGCCCGGATGAACAAGAGGATTCTAGGGGGTCGGACAAGTCGCCCAGGAAGGTGGCCCTGGCAGTGTTCCCTGCAGAGTGAACCCAGTGGGCACATTTGTGGTTGTGTCCTCATTGCCAAGAAATGGGTTCTGACGGTCGCCCACTGCTTCGAGGG
Seq A exon
GAGAGAGAATGCTGCCGTTTGGAAAGTGGTGTTTGGCATCAATAACCTAGACCACCCATCAACGTTCATGCAGATGCGCCTTGTGAAAACCATCATCCTGCATCCTCGCTACAGTCGAGCGGTGGTGGACTACGACATCAGCATAGTGGAGCTAAGCCAAGATATCAATGAAACAAGCTACGTCCGACCCGTCTGCTTACCCAGCCCGGATCAGTCCTTAGAACCTGATACTTATTGCTATATCACAGGCTGGGGACATATGGGCAACAAAA
Seq C2 exon
AAAAAAAAAAAAATCCAGTGCCTTTTAAGCTGCAAGAGGGAGAAGTACGTGTTATTTCTCTGGAACAATGTCAGTCCTACTTTGACATGAAGACCATCACCAACCGGATGATCTGTGCTGGCTATGAGTCTGGCACGGTTGACTCATGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002199-'20-21,'20-19,21-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.3=8.5),PF0008921=Trypsin=PU(19.1=76.3)
A:
PF0008921=Trypsin=FE(38.7=100)
C2:
PF0008921=Trypsin=FE(21.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCGGATGAACAAGAGGAT
R:
CAACCGTGCCAGACTCATAGC
Band lengths:
297-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]