MmuEX6018031 @ mm9
Exon Skipping
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72694030-72707437:-
Coord C1 exon
chr5:72707263-72707437
Coord A exon
chr5:72696114-72696385
Coord C2 exon
chr5:72694030-72694163
Length
272 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTGGATTGTTTTTAGGAG
3' ss Score
8.11
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ACTGTGGCCGCCGCCCTGCTGCCCGAATGAACAAGAGGATCCTTGGGGGTCGGACTAGTCGTCCTGGGAGGTGGCCGTGGCAGTGCTCTCTGCAGAGTGAACCCAGTGGACATATCTGTGGCTGTGTCCTCATTGCCAAGAAGTGGGTCCTGACAGTTGCCCATTGCTTTGAAGG
Seq A exon
GAGAGAAGACGCTGATGTTTGGAAAGTGGTATTTGGCATAAACAACCTGGACCATCCATCAGGCTTCATGCAGACCCGCTTTGTGAAGACCATCCTGCTACATCCCCGTTACAGTCGAGCAGTGGTAGACTATGATATCAGCGTGGTGGAGCTGAGCGATGATATCAATGAGACAAGCTACGTCAGACCTGTCTGCCTACCCAGTCCGGAGGAGTATCTAGAACCAGATACGTACTGCTACATCACAGGCTGGGGCCACATGGGCAATAAAA
Seq C2 exon
TGCCCTTTAAGCTGCAGGAGGGAGAGGTCCGCATTATCCCTCTGGAGCAGTGCCAGTCCTATTTTGACATGAAGACCATCACCAATCGGATGATCTGTGCTGGCTATGAGTCTGGCACCGTGGACTCCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.2=8.5),PF0008921=Trypsin=PU(19.7=76.3)
A:
PF0008921=Trypsin=FE(39.7=100)
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCCGAATGAACAAGAG
R:
CATGCAGGAGTCCACGGTG
Band lengths:
293-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: