RnoEX0023846 @ rn6
Exon Skipping
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38458058-38472153:+
Coord C1 exon
chr14:38458058-38458232
Coord A exon
chr14:38470073-38470344
Coord C2 exon
chr14:38472020-38472153
Length
272 bp
Sequences
Splice sites
3' ss Seq
TACTCTTGGTTTGTTTCTAGGAG
3' ss Score
8.08
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
ACTGTGGTCGCCGCCCTGCTGCCCGAATGAACAAGAGGATCCTTGGGGGTCGGACTAGTCGTCCTGGGAGGTGGCCGTGGCAGTGTTCTCTGCAGAGTGAACCCAGTGGACATATCTGTGGCTGTGTCCTCATTGCCAAGAAGTGGGTCCTGACAGTTGCCCATTGCTTTGAAGG
Seq A exon
GAGAGAGGATGCTGATGTCTGGAAAGTGGTATTTGGCATAAACAACCTGGACCATCCGTCAGGCTTCATGCAGACCCGCTTTGTGAAGACCATTCTGCTACATCCCCGTTACAGTCGAGCGGTGGTAGACTATGACATCAGCGTGGTGGAGCTGAGTGATGATATCAATGAGACAAGCTACGTCAGACCTGTCTGCCTACCCAGCCCCAGGGAGTTCCTAGAACCAGATACATACTGCTACATCACAGGCTGGGGCCACATGGGCAATAAAA
Seq C2 exon
TGCCCTTTAAGCTGCAGGAGGGGGAAGTCCGCATTATTCCTCTGGAGCAGTGCCAGTCCTATTTTGACATGAAGACCATCACCAATCGGATGATATGTGCTGGCTATGAGTCCGGCACTGTGGACTCATGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302-'32-23,'32-22,33-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.2=8.5),PF0008921=Trypsin=PU(19.7=76.3)
A:
PF0008921=Trypsin=FE(39.7=100)
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCCGAATGAACAAGAG
R:
ATACATGAGTCCACAGTGCCG
Band lengths:
292-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]