GgaEX6035583 @ galGal3
Exon Skipping
Gene
ENSGALG00000014144 | F1NZW6_CHICK
Description
NA
Coordinates
chr4:68639491-68644237:+
Coord C1 exon
chr4:68639491-68639665
Coord A exon
chr4:68642280-68642551
Coord C2 exon
chr4:68644104-68644237
Length
272 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTTTGTTCCTAAAAGGAG
3' ss Score
6.43
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
ATTGTGGCCATCGCCCTGCTGCTCGCATGAACAAAAGGATCCTTGGTGGCAGGACCAGTCGCCCAGGTCGATGGCCATGGCAGTGCTCTCTGCAGAGCGAGCCAAGTGGACACATATGTGGCTGTGTTTTGATTGCAAAGAGATGGGTCTTAACAGTAGCACACTGCTTTGAAGG
Seq A exon
GAGAGAAAATGCAGCTGTCTGGAAAGTAGTGTTTGGGATAAGCAATCTTGATCATCCATCAAGCTTCATGCAGACCCGACTGGTGAAGTCCATCATCTTGCATCCACGCTACAACAGAGCAGTTGTAGACTATGATATCAGCATTGTACAACTAGATGAAGAAATCAATGAAACGAGCTATGTAAGACCTGTCTGCTTGCCCAGCAAGGAACAGTTGGTACAGCCAGATACCTACTGCTACATCACAGGCTGGGGACACATGGGCAACAAAA
Seq C2 exon
TGCCTTTTAAGCTCCAAGAAGGAGAAGTGCGCATCATTTCCTTAGAACAATGCCAGTCATACTTTGACATGAAGACTATTACCAGCAGGATGCTGTGTGCAGGCTATGAGTCTGGCACTGTAGACTCTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014144-'20-24,'20-23,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154941=SRCR_2=PD(5.0=8.5),PF0008921=Trypsin=PU(19.7=76.3)
A:
PF0008921=Trypsin=FE(39.7=100)
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCGCATGAACAAAAGG
R:
CATGCAAGAGTCTACAGTGCCA
Band lengths:
292-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]