DreEX0003053 @ danRer10
Exon Skipping
Gene
ENSDARG00000101281 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr23:44181704-44187579:+
Coord C1 exon
chr23:44181704-44181890
Coord A exon
chr23:44184976-44185247
Coord C2 exon
chr23:44187446-44187579
Length
272 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTCCCCGTATGCAGGCG
3' ss Score
9.4
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
AGTGTGGCCGTCGCCCTGCTGCCCGGTTGGTGAAGAGAATTCTGGGAGGCCGAATGGGAGGCCGAACGAGCCGTCCGGGTCGCTGGCCATGGCAGTGCTCTCTGCAGAGCGACCCGAGCGGACACATCTGCGGCTGCGTCCTCATCGGGAATAAGTGGGCACTTACTGTAGCTCACTGCTTTGAGGG
Seq A exon
GCGTGAGAGTGCTGATGTGTGGAAGGTGGTTCTGGGCATAAATAATCTGGATCATCCGTCTCCATACATGCAAACGCGGCGAGTCAAGAGCATCATCGTTCACTCGCGCTACAATCGTGCCGTGGTGGATTATGACATCAGTGTACTGGAACTGGAGTCTGAGGTGCTGGTGACCAGTTACGTGCGACCTGTGTGTTTGCCGCGGCACGGTCAGCTGCCAAAACCTGACAAATACTGCCACATCACAGGCTGGGGACACGTGGGAAACCGCA
Seq C2 exon
TGCCGTTTAAGCTCCAGGAGGGAGAGGTGCGGATCATCTCTGTTTCTCAGTGTCAGTCTTACTTTGACATGAAGACCATCACCTCTCGCATGCTCTGTGCTGGATACGAGGCCGGAACCATCGACTCCTGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101281_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.7=71.4)
A:
PF0008921=Trypsin=FE(39.7=100)
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGGTTGGTGAAGAGAATT
R:
TACAGGAGTCGATGGTTCCGG
Band lengths:
299-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]