BtaEX6031471 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006837 | UBA6
Description
Bos taurus ubiquitin-like modifier activating enzyme 6 (UBA6), mRNA. [Source:RefSeq mRNA;Acc:NM_001083438]
Coordinates
chr6:85072654-85079513:-
Coord C1 exon
chr6:85079433-85079513
Coord A exon
chr6:85074126-85074203
Coord C2 exon
chr6:85072654-85072835
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTTGATATTAGGTT
3' ss Score
8.7
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTAGGATGTGGAGCCATAGGCTGTGAAATGTTAAAAAATTTTGCTTTGCTTGGTGTTGGCACAGGCAAACAGAAGGGAATG
Seq A exon
GTTACAGTAACAGATCCTGACTTGATAGAAAAATCCAACTTGAATAGACAGTTCCTATTTCGTCCTCATCACATACAG
Seq C2 exon
AAGCCTAAAAGCTGTACTGCTGCTGATGCAACCCTGAAAATAAATCCTCAGTTAAAAATAGATGCACATTTGAACAAAGTATGTTCAGCCACTGAGGCAATTTACAATGATGAGTTCTATACTAAGCAGGATATAATTATTACAGCATTAGATAATGTGGAAGCCAGGAGATATGTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006837-'18-25,'18-24,19-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(17.9=100)
A:
PF0089916=ThiF=FE(17.2=100)
C2:
PF0089916=ThiF=FE(41.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTTTGCTTGGTGTTGGC
R:
TCCTGCTTAGTATAGAACTCATCATT
Band lengths:
173-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]