MmuEX0050082 @ mm10
Exon Skipping
Gene
ENSMUSG00000035898 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:MGI Symbol;Acc:MGI:1913894]
Coordinates
chr5:86136309-86140436:-
Coord C1 exon
chr5:86140356-86140436
Coord A exon
chr5:86137817-86137894
Coord C2 exon
chr5:86136309-86136490
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTATTCTCCTGTTATAAGGTA
3' ss Score
7.79
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTAGGATGTGGTGCCATAGGCTGTGAAATGTTAAAAAATTTTGCATTACTGGGTGTTGGTACAGGCAGAGAGAAAGGAATG
Seq A exon
GTAACAGTTACAGATCCTGACTTGATAGAAAAATCCAATTTAAACAGACAGTTCCTGTTTCGTCCTCATCACATACAG
Seq C2 exon
AAACCTAAAAGCTATACTGCTGCTGAAGCAACTCTGAAAATAAATCCTCAATTAAAAATAGATGCACACCTGAACAAAGTTTGTCCAGCCACTGAGAGTATATACAGTGATGAATTTTACACTAAGCAAGATATCATTATTACAGCACTAGATAATGTGGAAGCCAGGAGATATGTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035898-'23-29,'23-26,24-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(17.8=100)
A:
PF0089916=ThiF=FE(17.1=100)
C2:
PF0089916=ThiF=FE(41.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGATGTGGTGCCATAGG
R:
ACTCTCAGTGGCTGGACAAAC
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types