GgaEX1061520 @ galGal4
Exon Skipping
Gene
ENSGALG00000011762 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr4:51047306-51049256:-
Coord C1 exon
chr4:51049176-51049256
Coord A exon
chr4:51048715-51048792
Coord C2 exon
chr4:51047306-51047487
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTGCCCCTTCTGACTTAGGTT
3' ss Score
10.31
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTTGGCTGTGGAGCAATAGGCTGTGAAATGCTAAAAAACTTTGCACTTCTTGGTGTTGGTACTGGACAAGATAAAGGATTG
Seq A exon
GTTACAATTACAGATCCAGACTTGATAGAGAAATCCAACCTGAACAGACAGTTTCTTTTTCGACCTCATCACATACAG
Seq C2 exon
AAACCTAAAAGCTATACTGCAGCAGAAGCAACTCTGAACATCAATCCTTGCTTAAAAATTGACTCATACATTAATAAAGTTTGTCCAGCCACCGAAAACACTTACAGTGATGAATTCTACACCAGGCAAGATGTGATTGTGACTGCTTTGGACAATGTGGAAGCAAGGAGATACATTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(17.8=100)
A:
PF0089916=ThiF=FE(17.1=100)
C2:
PF0089916=ThiF=FE(41.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTTCTTGGTGTTGGTACT
R:
ACAATCACATCTTGCCTGGTGT
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]