HsaEX0068631 @ hg38
Exon Skipping
Gene
ENSG00000033178 | UBA6
Description
ubiquitin like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr4:67638943-67644778:-
Coord C1 exon
chr4:67644698-67644778
Coord A exon
chr4:67641151-67641228
Coord C2 exon
chr4:67638943-67639124
Length
78 bp
Sequences
Splice sites
3' ss Seq
CCATATTTTCTTGATATTAGATT
3' ss Score
5.19
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTAGGGTGTGGAGCCATAGGCTGTGAAATGTTGAAAAATTTTGCTTTACTTGGTGTTGGCACAAGCAAAGAGAAAGGAATG
Seq A exon
ATTACAGTTACAGATCCTGACTTGATAGAGAAATCCAACTTAAATAGACAGTTCCTATTTCGTCCTCATCACATACAG
Seq C2 exon
AAACCTAAAAGCTACACTGCTGCTGATGCTACTCTGAAAATAAATTCTCAAATAAAGATAGATGCACACCTGAACAAAGTATGTCCAACCACTGAGACCATTTACAATGATGAGTTCTATACTAAACAAGATGTAATTATTACAGCATTAGATAATGTGGAAGCCAGGAGATACGTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033178_CASSETTE5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(17.5=92.3)
A:
PF0089916=ThiF=FE(17.2=100)
C2:
PF0089916=ThiF=FE(41.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATAGGCTGTGAAATGTTGA
R:
AATGGTCTCAGTGGTTGGACA
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development