RnoEX0095609 @ rn6
Exon Skipping
Gene
ENSRNOG00000021931 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:RGD Symbol;Acc:1308324]
Coordinates
chr14:23536577-23540069:+
Coord C1 exon
chr14:23536577-23536657
Coord A exon
chr14:23538680-23538757
Coord C2 exon
chr14:23539888-23540069
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCCTCTGATACAAGGTA
3' ss Score
4.65
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
GTAGGATGTGGCGCCATAGGCTGTGAAATGTTAAAAAATTTTGCATTACTGGGTGTTGGTACAGGTAGAGAGAAAGGAATG
Seq A exon
GTAACAGTTACAGATCCTGACTTGATAGAAAAATCCAACCTAAACAGACAGTTCCTGTTTCGCCCTCATCATATACAG
Seq C2 exon
AAACCTAAAAGCTATACTGCTGCTGAAGCAACTCTGAAAATAAATCCTCAATTAAAAATAGATGCACACCTGAACAAAGTCTGTCCAGCCACCGAGAGTACATACAGTGATGAATTTTACAATAAGCAAGACATCGTCATTACAGCACTAGATAATGTGGAAGCCAGGAGATATGTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021931-'24-25,'24-24,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(17.8=100)
A:
PF0089916=ThiF=FE(17.1=100)
C2:
PF0089916=ThiF=FE(41.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGGATGTGGCGCCATAGG
R:
GGTGGCTGGACAGACTTTGTT
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]