BtaEX6035695 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96290561-96292332:-
Coord C1 exon
chr8:96292227-96292332
Coord A exon
chr8:96291198-96291272
Coord C2 exon
chr8:96290561-96290730
Length
75 bp
Sequences
Splice sites
3' ss Seq
CAGCTTTTTGTTGTTCATAGGAC
3' ss Score
8.46
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTACGGTGGATTTTCCCTGGGTGCCAGTAATTCTCAGTCACTTCCTCCGAGTGAAGAAGTTAATGATGCCATCAAGCAAATGAAGAAACACTTGAAGGTGGTGAAG
Seq A exon
GACAGTTCTGCAGACCGATTTCTCAGCAGCTTGGGAAGGTTCATGACAGGACTGGACACAAAAAATAACGTCAAG
Seq C2 exon
GTGTGGTTCAACAACAAGGGCTGGCACGCCATCAGCTCTTTCTTGAATGTCATCAACAATGCCATTCTCCGGGCCAATCTGCAGAAGGGAGCGAACCCCAGCCAGTATGGGATTACTGCTTTCAATCACCCGCTGAACCTCACCAAGCAGCAGCTCTCAGAAGTGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'42-44,'42-43,43-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.7=100)
A:
PF126982=ABC2_membrane_3=FE(4.6=100)
C2:
PF126982=ABC2_membrane_3=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGTGGATTTTCCCTGGGT
R:
CCCGGAGAATGGCATTGTTGA
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]