RnoEX0004742 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69880195-69882002:-
Coord C1 exon
chr5:69881897-69882002
Coord A exon
chr5:69880818-69880892
Coord C2 exon
chr5:69880195-69880347
Length
75 bp
Sequences
Splice sites
3' ss Seq
CAGGATTCTGTTGTTCACAGGAC
3' ss Score
7.27
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTATGGCGGGTTTTCCCTGGGTGTCAGTGATTCTCAAGCACTTCCTCCGAGCCAAGAAGTTAATAATGCTATCAAGCAAATGAAGAAACTCCTGAAGCTGACCAAG
Seq A exon
GACAGCTCTGCAGATCGGTTCCTCAGCAGCTTGGGAAGGTTCATGACAGGACTGGACACCAAAAACAATGTCAAG
Seq C2 exon
GTGTGGTTCAATAACAAGGGCTGGCATGCCATCAGTTCATTCCTGAATGTCATCAACAATGCCATTCTCCGGGCCAACCTGCAGAAGGGAGAGAACCCAAGCCAGTATGGGATTACTGCTTTCAACCATCCCCTGAACCTCACCAAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'46-46,'46-45,47-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.7=100)
A:
PF126982=ABC2_membrane_3=FE(4.6=100)
C2:
PF126982=ABC2_membrane_3=FE(9.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTTCCCTGGGTGTCAGTG
R:
CCCGGAGAATGGCATTGTTGA
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]