MmuEX0002942 @ mm9
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53063161-53072234:-
Coord C1 exon
chr4:53072129-53072234
Coord A exon
chr4:53063807-53063881
Coord C2 exon
chr4:53063161-53063330
Length
75 bp
Sequences
Splice sites
3' ss Seq
CAGGATTCTGTTGTTTACAGGAC
3' ss Score
7.45
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTATGGCGGGTTTTCCCTGGGTGTCAGTAATTCTCAAGCACTTCCTCCGAGCCATGAAGTTAATGATGCTATCAAGCAAATGAAGAAACTCCTGAAGCTGACCAAG
Seq A exon
GACAGCTCCGCAGATCGCTTCCTCAGCAGCCTGGGAAGGTTCATGGCAGGGCTGGATACGAAAAACAATGTCAAG
Seq C2 exon
GTGTGGTTCAATAACAAGGGCTGGCATGCTATCAGTTCGTTCCTGAATGTCATCAACAATGCCATTCTCCGGGCCAACCTGCAGAAGGGAGAGAACCCGAGCCAGTATGGAATCACTGCTTTCAACCACCCCTTGAACCTCACTAAACAGCAGCTCTCAGAGGTGGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.7=100)
A:
PF126982=ABC2_membrane_3=FE(4.6=100)
C2:
PF126982=ABC2_membrane_3=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCTCCGAGCCATGAAGT
R:
ATACTGGCTCGGGTTCTCTCC
Band lengths:
175-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: