BtaEX6035863 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020243 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr8:101595989-101603841:-
Coord C1 exon
chr8:101603665-101603841
Coord A exon
chr8:101597281-101597451
Coord C2 exon
chr8:101595989-101596084
Length
171 bp
Sequences
Splice sites
3' ss Seq
GTTTGTTTATTTTCCTATAGAAA
3' ss Score
8.47
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CAAATCCATGCCCTGTCCCATTTGTGATCCCTGAGAATGCTGTGCTTTCTGAAAAGGAGTTCTATGTCGATCAAAACGTGTCTATCAAGTGTAGGGAAGGCTTCCTGCTCCGGGGCCAGAGCACCATCACATGCAACCCCGACGAGACGTGGACACAGACAAGCGCCAAATGTGAAA
Seq A exon
AAATCTCATGTGGTCCGCCAACTCATGTAGAAAATGCAATTGCCCGAGGCGTACATTATCAGTATGGGGACGTGATCACCTACTCCTGTTACAGTGGATACATGCTGGAGGGTTCCCTGAGGAGTGTTTGCCTAGAGAATGGAACCTGGACATCACCTCCTGTCTGCAGAG
Seq C2 exon
CTGTCTGTCGATTCCCATGTCAGAATGGAGGGATCTGCCAACGCCCAAATGCTTGTTCCTGTCCAGATGGCTGGATGGGTCGCCTCTGTGAAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020243-'47-52,'47-51,48-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.7)
A:
PF0008415=Sushi=WD(100=91.4)
C2:
PF0000822=EGF=PU(9.4=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCCTGTCCCATTTGTGA
R:
GCCATCTGGACAGGAACAAGC
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]