GgaEX1056598 @ galGal4
Exon Skipping
Gene
ENSGALG00000015721 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chrZ:66375057-66381334:-
Coord C1 exon
chrZ:66381158-66381334
Coord A exon
chrZ:66380169-66380339
Coord C2 exon
chrZ:66375057-66375152
Length
171 bp
Sequences
Splice sites
3' ss Seq
GGATGATTTCTTTTGTTTAGAGA
3' ss Score
4.41
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CAAACCCTTGTCCCGTGCCTTTCATAATCCCAGAGAATGCCCTTCTCTCTGAGGTGGATTTTTACGTCGGGCAGAATGTGTCCATCAGGTGCAGGGAAGGCTACCAGTTGAAAGGGCAGGCTGTGATCACTTGTAATGCTGATGAGACTTGGACTCCAACAACAGCTAAGTGTGAAA
Seq A exon
AGATATCTTGCGGGCCCCCAGCTCACATAGAGAATGCTTTCATCCGTGGTAGCTTCTATCAGTATGGAGATATGATCACCTACTCATGCTACAGTGGTTATATGCTGGAGGGACCCCTGCGGAGCATTTGCTTAGAAAATGGAACGTGGACAACACCACCTACATGCAAAG
Seq C2 exon
CTGTCTGTCGGTTCCCATGTCAGAATGGTGGAGTCTGTGAGCGACCAAATGCCTGCTCGTGTCCAGATGGCTGGATGGGTCGTCTCTGTGAAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015721-'63-64,'63-59,64-64
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.7)
A:
PF0008415=Sushi=WD(100=91.4)
C2:
PF0000822=EGF=PU(9.4=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGCCTTTCATAATCCCA
R:
TTCACAGAGACGACCCATCCA
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]