DreEX0008538 @ danRer10
Exon Skipping
Gene
ENSDARG00000013526 | SVEP1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:15985]
Coordinates
chr7:24073145-24078438:+
Coord C1 exon
chr7:24073145-24073342
Coord A exon
chr7:24076040-24076210
Coord C2 exon
chr7:24078343-24078438
Length
171 bp
Sequences
Splice sites
3' ss Seq
TCCATTTTAATCACACACAGGGG
3' ss Score
5.76
5' ss Seq
AAGGTAGCG
5' ss Score
6.91
Exon sequences
Seq C1 exon
CCAAACCATGCCCTCCTCTTCCTCATGGCTGGACTGTAGGCAGTGCCAATGCTACTCAGACGGTTTTTTCTGTAGGCCAGTCAGTACAAGTCAGTTGCCCTAAGGGTCAGCGGGTCAAAAGTAACCAAGGAAAAGGTATCGCCACCTTAACTTGCAGGAGTGATCAGACCTGGACCCCCATCAGTGCAGTGTGTGAGA
Seq A exon
GGGTGTCCTGCGGCCCACCATTGTACGTGTCAAACGGGGTAGTCCGTGGGGCAGTGTTCCAGTTTGGAGACATGGTGTTGTACTCATGTTACGCAGGCTTCACCATGGAGGGTTCTAGCAGGAGTGTGTGCTTGGACAATGGCACTTGGACCCAACCTCCTACCTGCAAAG
Seq C2 exon
CTGTCTGTTGGCGCCATTGTCAGAATGGAGGTGTGTGCCAAAGACCAAACACTTGCTCCTGTCCAGAGGGATGGATGGGACGATTTTGTGAAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013526_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=97.0),PF0279317=HRM=PU(95.7=65.7)
A:
PF0008415=Sushi=WD(100=91.4)
C2:
PF0000822=EGF=WD(100=75.8),PF0000822=EGF=PU(9.4=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCATGCCCTCCTCTTCC
R:
TTGGTCTTTGGCACACACCTC
Band lengths:
245-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]