MmuEX6093674 @ mm10
Exon Skipping
Gene
ENSMUSG00000028369 | Svep1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:MGI Symbol;Acc:MGI:1928849]
Coordinates
chr4:58048111-58053295:-
Coord C1 exon
chr4:58053119-58053295
Coord A exon
chr4:58049110-58049280
Coord C2 exon
chr4:58048111-58048206
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTATCTGTGTCTTCCCGTAGAAA
3' ss Score
11.78
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CAAATCCATGCCCTGTCCCTTTTGTGATTCCTGAGAACGCCGTCCTTTCTGAAAAAGAGTTTTATGTCGACCAGAATGTATCTATCAAGTGCAGGGAAGGCTTCCTGCTCAAAGGCAATGGTGTCATCACGTGCAGCCCTGACGAGACATGGACGCACACCAATGCCAGATGTGAAA
Seq A exon
AAATCTCCTGTGGTCCTCCAAGTCACGTAGAGAATGCAATTGCTCGAGGAGTGTATTACCAGTATGGGGACATGATCACCTACTCCTGTTACAGTGGCTACATGCTAGAAGGTTCCCTCCGGAGTGTTTGCCTAGAAAATGGAACATGGACACCATCTCCTGTTTGCAGAG
Seq C2 exon
CTGTCTGTCGGTTCCCATGTCAGAATGGAGGTGTCTGTCAACGTCCAAATGCTTGCTCATGCCCAGACGGCTGGATGGGACGTCTCTGTGAAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028369-'54-59,'54-58,56-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.7)
A:
PF0008415=Sushi=WD(100=91.4)
C2:
PF0000822=EGF=PU(9.4=9.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGATTCCTGAGAACGCCG
R:
TTCACAGAGACGTCCCATCCA
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types