RnoEX6021959 @ rn6
Exon Skipping
Gene
ENSRNOG00000033110 | Svep1
Description
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 [Source:RGD Symbol;Acc:1588987]
Coordinates
chr5:75149964-75156290:-
Coord C1 exon
chr5:75156114-75156290
Coord A exon
chr5:75150930-75151100
Coord C2 exon
chr5:75149964-75150059
Length
171 bp
Sequences
Splice sites
3' ss Seq
TTATCCGTGTCTTCCTATAGAAA
3' ss Score
10.16
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CAAATCCATGCCCTGTTCCTTTTGTGATTCCTGAGAATGCCCTCCTTTCTGAGAGAGAGTTTTACGTCAACCAGAATGTATCTATCAAGTGCAGAGAAGGCTTCCTGCTCAAAGGCAACGGCATCATCACGTGCAACCCTGACGAGACTTGGACACAGACAAACGCCAGATGTGAAA
Seq A exon
AAATCTCCTGTGGTCCTCCAACTCATGTGGAAAACGCAATTGCTCGAGGTGTGCATTACCAATATGGGGACATGGTCACCTTCTCCTGTTACAGTGGCTACATGCTAGAAGGTTCCCTCAGGAGTGTATGCCTAGAAAATGGAACATGGACACCACCTCCTATCTGCAGAG
Seq C2 exon
CTGTCTGCCGGTTCCCATGTCAGAATGGAGGGGTCTGCCAACGACCAAACGCTTGCTCCTGCCCAGACGGTTGGATGGGACGACTTTGTGAAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033110-'51-61,'51-60,52-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=91.7)
A:
PF0008415=Sushi=WD(100=91.4)
C2:
PF0000822=EGF=PU(9.4=9.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTCCTGAGAATGCCCTCCT
R:
ACAAAGTCGTCCCATCCAACC
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]