BtaEX6036159 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:106030681-106037604:-
Coord C1 exon
chr8:106037011-106037604
Coord A exon
chr8:106032168-106033577
Coord C2 exon
chr8:106030681-106030944
Length
1410 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTCTTCCCTGCAGGCC
3' ss Score
13.24
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GACCACAAGCACCCTGAGACATTCAGCCAAACTCACCTCCACCATGGGGGTCATGACTCGGCTATGGGCAGGCCTCTTCCTAGCACTGCTTGCCCTTCCGGCCGAAGGTGGCGTCCTCAAGAAAGTCATCCGGCACAAGCAGCAGAGCGGGATGAACGTCACCCTGCCAGAGGAAAACCAGCCGGTGGTGTTCAATCACGTCTACAATATCAAGCTGCCCGTGGGGTCCCAGTGTTCGGTGGATCTGGAATCTGCCAGCGGGGAGAAAGACTTGGCCGCACCGTCAGAGCCCCGGGAAAGCTTCCAGGAGCACACGGTGGACGGGGAAAACCAGATCGTCTTCACTCACCGCATCAACATCCCCCGCCGGGCCTGTGGCTGTGCAGCTGCTCCTGATGTCAAGGAGCTTCTGAGCAGACTGGAGGAGCTGGAGAACCTGGTGTCTTCCCTGCGGGAACAGTGCACCTCGGGAGCGGGCTGCTGCCTGCAATCTGCCGAAG
Seq A exon
GCCGCGTGGACACCAGGCCCTTCTGCAGTGGCAGGGGCAACTTCAGCACAGAAGGCTGCGGTTGCGTGTGTGAACCCGGCTGGAAAGGCCCCAACTGCTCTGAGCCCGAGTGCCCAGGCAACTGTCACCTGCATGGCCAGTGTCTGGACGGCCAGTGCGTGTGCCACGAGGGCTTCACCGGCGAGGACTGCGGCCAGCTGGCCTGTCCCAGCGACTGCAACGACCAGGGCAAGTGCGTGGACGGGGCCTGCGTCTGCTTTGAAGGCTACTCTGGGCTCGACTGCAGCCAGGAGACATGCCCGGTGCCCTGCAGCGAGGAGCACGGCCGCTGCGTGGACGGCCGCTGCGTGTGCCAGGAGGGCTTCGCAGGAGAGGACTGCAGGGAGCCCCTGTGTCTGCACAACTGCCACGGCCGCGGGCGCTGTGTGGAGAATGAGTGTGTGTGCGACGAGGGCTTCACGGGTGACGACTGCGGGGAACTCGTCTGCCCCAATGACTGCTTTGACCGCGGCCGCTGCCTCAACGGCACCTGCTCCTGCGACGAGGGCTTCACGGGCGAGGACTGCGGCCAGCTCGCCTGTCCCCACGCCTGCCACGGCCACGGCCGCTGTGATGAAGGCCAGTGCGTGTGCGACGAGGGCTTTGCGGGCCCAGACTGCAGCGAGCGGCGCTGCCCCTCCGACTGCCATGAGCGCGGCCGCTGCGTGGACGGGCGTTGCGAGTGCAATGATGGCTTCACCGGCGCAGACTGCGGAGAGCTGCAGTGTCCCCGCGACTGCAGCGGCCATGGACGCTGCGTGAACGGGCAGTGCGTGTGCGACGAGGGCTACACTGGTGAGGACTGCGGGCAGCGGCGGTGCCCCTCCGACTGCCACGGCCGTGGGCGCTGCGTGGACGGGCGCTGTGAGTGCCAGCCTGGCTTCCAGGGTGATGACTGCGGCGAGATGAGCTGCCCGCACGATTGCCACCAGCACGGGCGCTGCGTGAACGGCATGTGTGTGTGTGACGACGCCTACACGGGCGAGGACTGCCGCGAACTCCGCTGCCCCGGGGACTGCAGCCAGCGCGGCCGCTGCGTGGACGGGCGCTGCGTGTGCGAGGACGGCTTCGCCGGCCCCGACTGCGCGGACCTCGCCTGTCCTGGCAACTGCCACGGCCGCGGGCGCTGCGTGGACGGCCAGTGCGTGTGCCTCGAGGGCTTCACCGGGCCCGACTGCGCGCAGCGCAGGTGTCCCGGCGACTGTCACGGCCAGGGCCGCTGCGTGGACGGCCAGTGCGTGTGCCACGAGGGCTTCACCGGACCCGACTGTGCACAGCGCTCCTGTCCCAACGACTGCAGCAACTGGGGGCAGTGCGTCTCTGGCCGCTGCGTTTGCAATGAGGGATACACCGGGGAAGACTGCTCCCAGG
Seq C2 exon
TGTCCCCTCCCAAAGACCTTGTCGTGACAGAAGTGACAGAAGAGACCGTAAACCTGGCCTGGGACAATGAGATGCGGGTCACGGAGTACCTCATCGTGTACACACCCACCCACGAGGATGGCCTGGAAATGCAGTTCCGGGTCCCTGGAGACCAGACGTCCGCCACCATCCGGGAGCTGGAGCCTGGAGTGGAGTACTTCATCCGTGTGTTCGCCATCCTGGAGAACAAGAAGAGCATTCCAGTCAGCGCCAGGGTGGCCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575-'2-2,'2-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=0.000 C2=0.112
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.9),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7)
C2:
PF0004116=fn3=WD(100=88.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATATCAAGCTGCCCGTGG
R:
AGGCCAGGTTTACGGTCTCTT
Band lengths:
357-1767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]