MmuEX6093952 @ mm9

Exon Skipping

Gene

ENSMUSG00000028364 | Tnc

Description

tenascin C [Source:MGI Symbol;Acc:MGI:101922]

Coordinates

chr4:63675929-63681759:-

Coord C1 exon

chr4:63681178-63681759

Coord A exon

chr4:63677865-63679274

Coord C2 exon

chr4:63675929-63676192

Length

1410 bp

Sequences

Splice sites

3' ss Seq

ACCTATTATCTTCAATGCAGGTC

3' ss Score

8.98

5' ss Seq

AGGGTGAGT

5' ss Score

9.25

Exon sequences

Seq C1 exon

CACCCTACAGATCTAGAGACACCTAGCCAGTCCAACCTCCACCATGGGGGCCGTGACCTGGCTACTGCCAGGCATCTTTCTAGCTTTGTTTGCCCTCACTCCCGAAGGTGGGGTCCTCAAGAAAATCATCAGGCACAAGCGAGAGAGTGGGCTAAACATGACCCTGCCAGAAGAGAATCAGCCAGTGGTGTTCAACCATATCTACAACATCAAGTTGCCCATGGGTTCCCAATGCTCAGTGGATCTGGAGTCAGCGAGTGGGGAGAAAGACCTGACCCCCACGCCAGAGTCCAGTGGGAGCTTCCAGGAACATACAGTGGATGGGGAAAACCAAATTGTATTCACACACCGCATCAACATCCCCCGCCGGGCCTGTGGCTGTGCTGCAGCTCCAGATGTGAAGGAGCTCCTGAGCAGGCTGGAGGAGCTGGAGTTGCTGGTATCGTCTCTAAGGGAGCAGTGCACCATGGGTACAGGCTGTTGCCTCCAACCTGCAGAAG

Seq A exon

GTCGTCTGGACACCAGGCCCTTCTGCAGCGGACGGGGCAACTTCAGTGCAGAAGGCTGCGGCTGTGTCTGTGAACCAGGCTGGAAAGGCCCCAACTGCTCTGAGCCTGACTGCCCTGGGAACTGTAATCTCAGAGGCCAGTGCCTTGACGGCCAGTGTATCTGTGACGAGGGTTTCACTGGGGAAGACTGCAGCCAGCTGGCCTGTCCGAACGACTGCAATGACCAGGGCAGGTGTGTGAACGGGGTCTGTGTGTGCTTCGAAGGCTATGCCGGCCCTGACTGTGGCCTGGAAGTCTGCCCAGTGCCCTGCAGCGAGGAACACGGGATGTGTGTGGATGGCAGGTGTGTGTGCAAAGATGGCTTTGCGGGTGAGGACTGCAACGAGCCCCTTTGCCTCAACAACTGCTACAATCGTGGGCGGTGTGTGGAGAACGAGTGTGTCTGCGACGAGGGCTTCACTGGCGAGGACTGCAGTGAGCTCATTTGCCCCAACGACTGCTTCGACCGCGGTCGCTGCATCAATGGCACCTGCTACTGTGAAGAAGGTTTCACGGGCGAAGACTGCGGTGAGCTCACCTGCCCCAACGACTGTCAGGGCCGTGGCCAGTGTGAGGAGGGACAGTGTGTTTGCAACGAGGGCTTTGCAGGAGCAGACTGCAGTGAAAAGCGGTGTCCCGCCGATTGTCACCACCGTGGCCGCTGCCTCAACGGGCAGTGTGAGTGTGACGATGGGTTCACAGGGGCTGACTGTGGGGATCTCCAGTGTCCCAATGGCTGCAGTGGGCATGGCCGTTGTGTCAACGGGCAGTGCGTGTGTGACGAGGGCTATACCGGAGAAGACTGTAGCCAGCGGCGATGCCCCAATGACTGTCACAACCGGGGTCTCTGCGTACAGGGCAAGTGCATATGTGAACAAGGCTTCAAGGGCTTTGACTGTAGTGAGATGAGCTGTCCCAATGACTGCCACCAACATGGCCGCTGTGTGAATGGCATGTGTATCTGTGATGACGACTACACTGGGGAAGACTGCAGAGACCGGCGCTGTCCCCGGGACTGTAGCCAGCGGGGGCGCTGTGTAGACGGACAGTGCATCTGTGAGGATGGCTTCACTGGCCCTGACTGTGCTGAGCTTTCCTGCCCCAGTGACTGCCACGGCCATGGCCGCTGTGTGAATGGCCAATGCATCTGCCACGAGGGCTTCACTGGCAAAGACTGCAAAGAGCAAAGGTGCCCCAGTGATTGCCATGGCCAAGGCCGCTGTGAGGACGGCCAGTGTATCTGCCATGAGGGCTTTACGGGCCTGGACTGTGGGCAGCGCTCCTGTCCCAATGACTGCAGCAACCAAGGACAATGTGTGTCAGGCCGCTGCATCTGCAATGAAGGTTACACAGGGATAGACTGCTCTGAGG

Seq C2 exon

TGTCCCCTCCCAAAGACCTTATTGTGACAGAAGTAACAGAGGAGACTGTAAATCTGGCATGGGACAATGAGATGCGGGTCACTGAGTACCTCATTATGTACACACCCACCCATGCTGATGGCCTAGAGATGCAGTTCCGTGTGCCTGGGGACCAGACATCCACCACCATTCGGGAGCTGGAACCAGGGGTGGAGTACTTCATTCGTGTGTTCGCCATCTTGGAAAACAAGAGGAGCATCCCTGTCAGTGCCAGGGTTGCCACCT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000028364-'0-1,'0-0,1-1=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.163 A=0.000 C2=0.101

Domain overlap (PFAM):

C1:

NO

A:

PF126612=hEGF=WD(100=2.8),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.9),PF126612=hEGF=WD(100=2.8),PF0045114=Toxin_2=WD(100=6.2),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7)

C2:

PF0004116=fn3=WD(100=87.6)

Main Inclusion Isoform:

ENSMUSP00000102995