GgaEX0027582 @ galGal3
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
NA
Coordinates
chr17:3072744-3077584:-
Coord C1 exon
chr17:3076992-3077584
Coord A exon
chr17:3074763-3076076
Coord C2 exon
chr17:3072744-3073007
Length
1314 bp
Sequences
Splice sites
3' ss Seq
TTCCTGACTCGTTGGTGCAGGTC
3' ss Score
7.86
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
AGACTCCATCAGCTTTGAAAAGGAACTGAGCACTACAATGGGACTCCCTTCCCAGGTTTTGGCCTGTGCCATCTTAGGTTTGCTGTACCAGCATGCCAGTGGTGGGCTCATCAAGCGAATTATCCGGCAGAAGCGGGAGACTGGGCTCAATGTGACCTTACCAGAGGATAATCAGCCTGTGGTTTTCAATCATGTCTACAACATCAAGCTGCCTGTTGGCTCCCTTTGCTCTGTGGACCTGGACACAGCAAGTGGGGACGCAGACCTGAAGGCAGAAATTGAGCCTGTCAAGAATTACGAGGAGCATACGGTGAATGAGGGGAACCAGATTGTCTTCACGCACCGCATCAACATTCCCCGCCGGGCCTGTGGCTGTGCGGCTGCCCCAGACATCAAGGACCTGCTGAGCAGACTGGAGGAGCTGGAGGGGCTGGTATCCTCCCTCCGGGAGCAGTGTGCCAGCGGGGCTGGATGCTGTCCTAATTCCCAGACAGCAGAAG
Seq A exon
GTCGCCTGGACACGGCCCCCTATTGCAGTGGGCACGGCAACTACAGCACCGAGATCTGTGGCTGCGTGTGCGAGCCAGGCTGGAAAGGCCCCAACTGCTCCGAACCGGCCTGCCCACGCAACTGCCTCAACCGCGGCCTCTGCGTGCGGGGCAAATGCATCTGCGAGGAGGGCTTTACCGGCGAGGACTGCAGCCAGGCTGCCTGCCCGTCTGACTGCAACGACCAAGGCAAGTGTGTGGATGGGGTGTGCGTCTGCTTCGAGGGCTACACGGGCCCGGACTGCGGCGAGGAGCTCTGCCCCCACGGGTGTGGCATTCACGGGCGCTGTGTGGGTGGACGCTGTGTGTGCCACGAGGGCTTCACTGGCGAGGACTGCAATGAGCCTCTGTGCCCCAACAACTGTCACAACCGCGGGCGCTGTGTGGACAACGAGTGCGTCTGCGATGAGGGCTACACGGGAGAGGACTGCGGCGAGCTGATTTGCCCCAATGACTGCTTTGACCGCGGGCGCTGCATCAATGGGACCTGCTTCTGCGAGGAGGGCTACACTGGAGAGGACTGCGGCGAGCTGACCTGCCCCAACAACTGCAACGGCAACGGGCGCTGTGAGAACGGGCTGTGTGTGTGCCATGAGGGCTTCGTGGGGGATGACTGCAGCCAGAAGAGGTGCCCGAAGGACTGCAATAACCGCGGGCGCTGCGTGGATGGGCGCTGTGTGTGCCATGAGGGGTACCTGGGGGAGGACTGTGGGGAGCTGCGGTGCCCCAACGACTGCCACAACCGCGGGCGCTGCGTCAACGGGCAGTGTGTGTGTGATGAGGGATTCATTGGGGAGGACTGTGGAGAGCTGCGGTGCCCCAACGACTGCCACAACCGCGGGCGCTGCGTCAATGGGCAGTGCGAGTGCCACGAGGGATTCATCGGGGAGGACTGCGGGGAGCTGCGGTGTCCCAACGACTGCAACAGCCATGGGCGCTGTGTCAATGGGCAGTGCGTGTGTGATGAGGGGTACACAGGGGAGGACTGCGGGGAGTTGCGGTGCCCCAACGACTGCCACAACCGCGGGCGCTGCGTGGAGGGACGCTGTGTGTGTGACAACGGCTTCATGGGGGAGGACTGCGGGGAGCTGTCCTGTCCCAATGACTGCCACCAGCACGGGCGCTGCGTCGATGGGCGCTGCGTGTGCCATGAGGACTTCACTGGGGAAGACTGCCGGGAACGGTCCTGCCCCAATGACTGCAACAACGTGGGCCGCTGTGTCGAGGGACGGTGTGTCTGTGAGGAAGGTTACATGGGGATCGACTGTTCTGATG
Seq C2 exon
TGTCTCCTCCAACAGAGCTGACTGTAACGAATGTAACAGATAAAACGGTAAATCTGGAATGGAAGCATGAGAATCTCGTCAATGAGTACCTTGTCACCTATGTCCCTACCAGCAGTGGTGGCTTAGATCTACAGTTCACCGTACCAGGAAACCAGACATCTGCCACTATTCATGAGCTGGAGCCTGGTGTGGAATACTTCATCCGTGTCTTTGCAATCCTTAAAAACAAGAAAAGTATTCCAGTCAGTGCCAGAGTAGCGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
PF126612=hEGF=WD(100=3.0),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2),PF079748=EGF_2=WD(100=6.2)
C2:
PF0004116=fn3=WD(100=88.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATACGGTGAATGAGGGGA
R:
TGTCTGGTTTCCTGGTACGGT
Band lengths:
356-1670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]