MmuEX6093952 @ mm10
Exon Skipping
Gene
ENSMUSG00000028364 | Tnc
Description
tenascin C [Source:MGI Symbol;Acc:MGI:101922]
Coordinates
chr4:64014895-64020725:-
Coord C1 exon
chr4:64020144-64020725
Coord A exon
chr4:64016831-64018240
Coord C2 exon
chr4:64014895-64015158
Length
1410 bp
Sequences
Splice sites
3' ss Seq
ACCTATTATCTTCAATGCAGGTC
3' ss Score
8.98
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CACCCTACAGATCTAGAGACACCTAGCCAGTCCAACCTCCACCATGGGGGCCGTGACCTGGCTACTGCCAGGCATCTTTCTAGCTTTGTTTGCCCTCACTCCCGAAGGTGGGGTCCTCAAGAAAATCATCAGGCACAAGCGAGAGAGTGGGCTAAACATGACCCTGCCAGAAGAGAATCAGCCAGTGGTGTTCAACCATATCTACAACATCAAGTTGCCCATGGGTTCCCAATGCTCAGTGGATCTGGAGTCAGCGAGTGGGGAGAAAGACCTGACCCCCACGCCAGAGTCCAGTGGGAGCTTCCAGGAACATACAGTGGATGGGGAAAACCAAATTGTATTCACACACCGCATCAACATCCCCCGCCGGGCCTGTGGCTGTGCTGCAGCTCCAGATGTGAAGGAGCTCCTGAGCAGGCTGGAGGAGCTGGAGTTGCTGGTATCGTCTCTAAGGGAGCAGTGCACCATGGGTACAGGCTGTTGCCTCCAACCTGCAGAAG
Seq A exon
GTCGTCTGGACACCAGGCCCTTCTGCAGCGGACGGGGCAACTTCAGTGCAGAAGGCTGCGGCTGTGTCTGTGAACCAGGCTGGAAAGGCCCCAACTGCTCTGAGCCTGACTGCCCTGGGAACTGTAATCTCAGAGGCCAGTGCCTTGACGGCCAGTGTATCTGTGACGAGGGTTTCACTGGGGAAGACTGCAGCCAGCTGGCCTGTCCGAACGACTGCAATGACCAGGGCAGGTGTGTGAACGGGGTCTGTGTGTGCTTCGAAGGCTATGCCGGCCCTGACTGTGGCCTGGAAGTCTGCCCAGTGCCCTGCAGCGAGGAACACGGGATGTGTGTGGATGGCAGGTGTGTGTGCAAAGATGGCTTTGCGGGTGAGGACTGCAACGAGCCCCTTTGCCTCAACAACTGCTACAATCGTGGGCGGTGTGTGGAGAACGAGTGTGTCTGCGACGAGGGCTTCACTGGCGAGGACTGCAGTGAGCTCATTTGCCCCAACGACTGCTTCGACCGCGGTCGCTGCATCAATGGCACCTGCTACTGTGAAGAAGGTTTCACGGGCGAAGACTGCGGTGAGCTCACCTGCCCCAACGACTGTCAGGGCCGTGGCCAGTGTGAGGAGGGACAGTGTGTTTGCAACGAGGGCTTTGCAGGAGCAGACTGCAGTGAAAAGCGGTGTCCCGCCGATTGTCACCACCGTGGCCGCTGCCTCAACGGGCAGTGTGAGTGTGACGATGGGTTCACAGGGGCTGACTGTGGGGATCTCCAGTGTCCCAATGGCTGCAGTGGGCATGGCCGTTGTGTCAACGGGCAGTGCGTGTGTGACGAGGGCTATACCGGAGAAGACTGTAGCCAGCGGCGATGCCCCAATGACTGTCACAACCGGGGTCTCTGCGTACAGGGCAAGTGCATATGTGAACAAGGCTTCAAGGGCTTTGACTGTAGTGAGATGAGCTGTCCCAATGACTGCCACCAACATGGCCGCTGTGTGAATGGCATGTGTATCTGTGATGACGACTACACTGGGGAAGACTGCAGAGACCGGCGCTGTCCCCGGGACTGTAGCCAGCGGGGGCGCTGTGTAGACGGACAGTGCATCTGTGAGGATGGCTTCACTGGCCCTGACTGTGCTGAGCTTTCCTGCCCCAGTGACTGCCACGGCCATGGCCGCTGTGTGAATGGCCAATGCATCTGCCACGAGGGCTTCACTGGCAAAGACTGCAAAGAGCAAAGGTGCCCCAGTGATTGCCATGGCCAAGGCCGCTGTGAGGACGGCCAGTGTATCTGCCATGAGGGCTTTACGGGCCTGGACTGTGGGCAGCGCTCCTGTCCCAATGACTGCAGCAACCAAGGACAATGTGTGTCAGGCCGCTGCATCTGCAATGAAGGTTACACAGGGATAGACTGCTCTGAGG
Seq C2 exon
TGTCCCCTCCCAAAGACCTTATTGTGACAGAAGTAACAGAGGAGACTGTAAATCTGGCATGGGACAATGAGATGCGGGTCACTGAGTACCTCATTATGTACACACCCACCCATGCTGATGGCCTAGAGATGCAGTTCCGTGTGCCTGGGGACCAGACATCCACCACCATTCGGGAGCTGGAACCAGGGGTGGAGTACTTCATTCGTGTGTTCGCCATCTTGGAAAACAAGAGGAGCATCCCTGTCAGTGCCAGGGTTGCCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028364-'1-7,'1-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.000 C2=0.101
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.9),PF126612=hEGF=WD(100=2.8),PF0045114=Toxin_2=WD(100=6.2),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7)
C2:
PF0004116=fn3=WD(100=87.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAGCTTCCAGGAACAT
R:
CACGGAACTGCATCTCTAGGC
Band lengths:
349-1759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types