RnoEX6022119 @ rn6
Exon Skipping
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79844781-79849949:-
Coord C1 exon
chr5:79849368-79849949
Coord A exon
chr5:79846787-79848196
Coord C2 exon
chr5:79844781-79845044
Length
1410 bp
Sequences
Splice sites
3' ss Seq
ACCTGTTCTCTTCACTGCAGGCC
3' ss Score
11
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CACCCTACAGATCTAGAGACACCTAGCCAATCCAACCTCTACCATGGGGGCCGTGACCTGGCTATTGCCAGGCATCTTCCTAGCTTTGTTTGCCCTCACTCCTGAAGGTGGGGTCCTCAAGAAAGTCATCAGGCACAAGCGAGAGAGTGGGCTGAACTTGACCTTGCCAGAGGAGAATCAGCCAGTGGTGTTCAACCATATCTACAACATCAAGTTGCCCATGGGTTCTCAGTGCTCAGTGGATCTAGAGTCAACGAGTGGAGAGAAAGACCTGAGCCCCACACCAGAGTCCAGTGGAAGCTTCCAGGAGCATACAGTGGATGGGGAAAATCAGATTGTGTTCACACACCGCATCAACATCCCTCGTCGGGCCTGTGGCTGTGCCGCAGCTCCAGATGTGAAGGAGCTCCTGAGCAGACTGGAGGAACTGGAGATGTTGGTATCTTCTCTAAGGGAGCAGTGCACCATGGGTACAGGCTGTTGCCTCCAACCTGCAGAAG
Seq A exon
GCCGTCTGGACAGCAGGCCCTTCTGCAGCGGCAGGGGTAACTTCAGTGCTGAAGGTTGTGGCTGTGTCTGTGAACCAGGCTGGAAAGGTCCCAACTGCTCTGAGCCTGAATGCCCTGGAAACTGTAATCTCAGAGGCCAGTGCCTTGATGGACAGTGTATCTGTGACCAGGGTTTCACTGGGGAAGACTGCAGCCAGCTAGCCTGTCCCAATGACTGCAATGACCAGGGCAAGTGTGTGAATGGGGTCTGTGTGTGCTTCGAAGGCTATGCCGGCCTTGACTGTGGCCTGGAAGTCTGCCCAGTGCCGTGCAGCGAGGAACACGGGATGTGTGTGGATGGCAGGTGTGTGTGCAAAGATGGCTTTGCTGGTGAAGACTGCAATGAGCCCCTTTGCTTCAACAACTGCAACAACCGTGGGCGGTGTGTGGAGAACGAATGCGTCTGTGATGAGGGCTTCACGGGCGAAGACTGCAGCGAGCTCATTTGCCCCAATGACTGCTTCGACCGAGGTCGCTGCATCAACGGCACCTGCTACTGTGAAGAAGGTTTCACAGGTGAAGACTGTGGTGAGCTCACCTGCCCCAACAACTGTCAGGGCCATGGCCAGTGTGAAGAGGGACAGTGTGTTTGCAACGAGGGCTTTGCAGGGGCAGACTGCAGTGAAAAGCGGTGTCCCGCAGACTGTCACCACCATGGCCGCTGTCTCAACGGACAGTGTGAGTGTGACGATGGGTTCACAGGGGCTGACTGTGGGGAACTCCAGTGCCCCAATGGCTGCAGTGGGCATGGCCGCTGTGTCAATGGGCAGTGTGTGTGTGACGAGGGCTACACCGGAGAAGACTGTAGCCAACGGCGATGCCCCAATGACTGCCACAACCGGGGTCACTGTGTACAGGGCAAATGCATATGTGAGCAAGGCTTCAAAGGCTTTGACTGTAGTGAGATGAGCTGTCCCAATGACTGCCACCAGCATGGCCGCTGTGTGAATGGCATGTGCATCTGTGATGATGACTACACTGGGGAAGACTGCAGAGACCGCCGCTGTCCCCGGGACTGTAGCCAGAGGGGGCGCTGTGTGGACGGACAGTGCATTTGTGAGGATGGTTTCACTGGTTCTGACTGTGCTGAGCTCTCCTGCCCTGGTGACTGCCACGGCCATGGCCGCTGTGTGAATGGCCAATGCATCTGCCACGAGGGCTTCACCGGCAAAGACTGCAAAGAGCAAAGGTGCCCCAGTGACTGCCACGGCCAAGGCCGCTGTGAGGACGGCCAATGTATCTGTCATGAGGGCTTCACAGGCCTGGACTGTGGGCAGCGCTCCTGTCCCAATGACTGCAGCAACCAGGGACAATGTGTGGCAGGCCGCTGCATCTGCAATGAAGGCTACACAGGGGTAGACTGCTCTGAGG
Seq C2 exon
TGTCCCCTCCCAAAGACCTTATTGTGACAGAAGTAACAGAGGAGACTGTAAATCTGGCATGGGACAATGAGATGCGGGTCACTGAGTACCTCATTATGTACACACCCACCCATGCTGATGGCCTGGAGATGCAGTTCCGTGTGCCTGGGGACCAGACATCTACCACCATCCGGGAGCTGGAGCCAGGAGTGGAGTACTTCATTCATGTGTTCGCCATCTTGGAGAACAAGAGGAGCATCCCTGTCAGTGCCAGAGTTGCCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.144 A=0.000 C2=0.101
Domain overlap (PFAM):
C1:
NO
A:
PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.9),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7),PF079748=EGF_2=WD(100=5.7)
C2:
PF0004116=fn3=WD(100=87.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAGTCCAGTGGAAGCTT
R:
GAACTGCATCTCCAGGCCATC
Band lengths:
355-1765
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]