BtaEX6036169 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:105983932-105988458:-
Coord C1 exon
chr8:105988315-105988458
Coord A exon
chr8:105986066-105986185
Coord C2 exon
chr8:105983932-105984075
Length
120 bp
Sequences
Splice sites
3' ss Seq
ATCACTGTGTTTCCTTGCAGCTC
3' ss Score
11.72
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTGCGCCCTCAGCGGTGACTGTGGATGGGACCAAGACCCAGACCAGGCTGCTGAGACTCTTACCTGGAGCAGATTACCTGGTCAGCGTCATCGCCCTGAAGGGCTTTGAGGAAAGCGAGCCTGTCTCGGGGACGCTCACCACAG
Seq A exon
CTCTGGATGGCCCATCTAGCTTGGTGACAGCCAACATCACTGACTCAGAAGCCTTGGCCATGTGGCAGCCAGCCATCGCCCCTGTGGATAATTACGTCATCTCCTACACAGGGGAGAGAG
Seq C2 exon
TGCCAGAAATTACCCGCACGGTGTCCGGGAACACGGTGGAGTATGCACTGACCAATCTCGAGCCTGCCACAGAATACACGCTGAGGATCTTTGCAGAGAAAGGGCCCCAGAAGAGCTCAACCATCACCACCAAGTTCACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575-'26-25,'26-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.024 C2=0.102
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(50.0=81.6)
A:
PF0004116=fn3=PU(48.1=92.7)
C2:
PF0004116=fn3=PD(50.6=81.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTGGATGGGACCAAGA
R:
CTCTTCTGGGGCCCTTTCTCT
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]