HsaEX6062713 @ hg19
Exon Skipping
Gene
ENSG00000041982 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:5318]
Coordinates
chr9:117798377-117803363:-
Coord C1 exon
chr9:117803220-117803363
Coord A exon
chr9:117800540-117800659
Coord C2 exon
chr9:117798377-117798520
Length
120 bp
Sequences
Splice sites
3' ss Seq
TCCACCATCTTTCTTTGCAGCTC
3' ss Score
10.8
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTACACCCTCCATGGTAACTGTGGACGGAACCAAGACTCAGACCAGGCTGGTGAAACTCATACCTGGCGTGGAGTACCTTGTCAGCATCATCGCCATGAAGGGCTTTGAGGAAAGTGAACCTGTCTCAGGGTCATTCACCACAG
Seq A exon
CTCTGGATGGCCCATCTGGCCTGGTGACAGCCAACATCACTGACTCAGAAGCCTTGGCCAGGTGGCAGCCAGCCATTGCCACTGTGGACAGTTATGTCATCTCCTACACAGGCGAGAAAG
Seq C2 exon
TGCCAGAAATTACACGCACGGTGTCCGGGAACACAGTGGAGTATGCTCTGACCGACCTCGAGCCTGCCACGGAATACACACTGAGAATCTTTGCAGAGAAAGGGCCCCAGAAGAGCTCAACCATCACTGCCAAGTTCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041982-'29-32,'29-31,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=0.000 C2=0.104
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(50.0=81.6),PF106044=Polyketide_cyc2=PU(4.2=14.3)
A:
PF0004116=fn3=PU(48.1=92.7),PF106044=Polyketide_cyc2=FE(24.1=100)
C2:
PF0004116=fn3=PD(50.6=81.6),PF106044=Polyketide_cyc2=FE(28.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGAACCAAGACTCAGACCA
R:
CTTGGCAGTGATGGTTGAGCT
Band lengths:
254-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)