DreEX0080085 @ danRer10
Exon Skipping
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:27970756-27972667:-
Coord C1 exon
chr5:27972524-27972667
Coord A exon
chr5:27970980-27971099
Coord C2 exon
chr5:27970756-27970899
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGTATCTGTTGGCCCTCAGCTC
3' ss Score
7.56
5' ss Seq
GTGGTAACT
5' ss Score
5.08
Exon sequences
Seq C1 exon
GCAGTCCTCTGACACTGAGAGTGGATGGAGGAGAGTCTCAAGCCATGCTCTCCAATCTGACCCCTGGTGTCACCTACCAGGTCACGGTCATCGCTGTTAAGGGCTTGGAGGAGAGTGAACCCGGATCTGAAAGGGTCACCACAG
Seq A exon
CTCTGGATAAACCTCGAGGCCTGACAGCAGTGAACATCAGCGACACTGAAGCCCTGCTGTTGTGGCAGCCGTCCATCGCCACTGTAGACGGATATGTGATCACATACAGCGCAGACAGTG
Seq C2 exon
TGGCTCCGGTGATGGAAAGGGTGTCTGGGAACACGGTGGAGTTTGAGATGAGCTCCCTCACTCCTGCTACTTTATACACTGTTAAAGTCTATGCATTCCGAGACACAGCCAAGAGTGCGGCAACCAGCACTGACTTCACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948-'19-27,'19-26,22-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=0.049 C2=0.041
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(49.4=83.3)
A:
PF0004116=fn3=PU(47.5=92.7)
C2:
PF0004116=fn3=PD(51.2=83.7)
Main Skipping Isoform:
ENSDART00000131729fB6720
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGCTCTCCAATCTGACC
R:
AGTGAAGTCAGTGCTGGTTGC
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]