RnoEX6022121 @ rn6
Exon Skipping
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79800812-79805325:-
Coord C1 exon
chr5:79805182-79805325
Coord A exon
chr5:79802864-79802983
Coord C2 exon
chr5:79800812-79800955
Length
120 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTGTATTTCTTCCAGCTC
3' ss Score
9.86
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTCCCCCATCCATGGTGACCGTGGATGGGACGGATACTGAGACCCGACTGGTGAGGCTCACCCCTGGAGTGGAGTACCACGTCAGTGTGATTGCCATGAAGGGATTTGAAGAAAGTGATCCGGTCTCGGGGTCTCTAATCACAG
Seq A exon
CTCTCGATGGTCCATCTGGCCTTCTGACAGCCAACATCACAGACTCAGAAGCCTTGGCCATGTGGCAGCCAGCCATTGCCACTGTAGACAGTTATGTCATCTCCTACACAGGGGAGAGAG
Seq C2 exon
TGCCAGAAATTACCCGCACAGTGTCTGGGAATACAGTGGAGTTTGAACTACATGACCTGGAGCCTGCCACAGAGTACACACTGAGTGTCTTTGCAGAGAAAGGTCACCAGAAGAGTTCTACCATCGCTACGAAATTTACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645-'30-44,'30-43,32-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(50.0=81.6)
A:
PF0004116=fn3=PU(48.1=92.7)
C2:
PF0004116=fn3=PD(50.6=81.6)
Main Skipping Isoform:
ENSRNOT00000084563fB15403
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATACTGAGACCCGACTG
R:
GCGATGGTAGAACTCTTCTGGTG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]