GgaEX1059499 @ galGal3
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
NA
Coordinates
chr17:3041953-3043804:-
Coord C1 exon
chr17:3043661-3043804
Coord A exon
chr17:3042438-3042557
Coord C2 exon
chr17:3041953-3042096
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATATTATCATTTCTTCCAGCTC
3' ss Score
7.54
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GCACTCCCAATGTTGTTACAGTTGATGGAAGCAAGACAAGGACAAAGCTGGTGAAGTTAGTCCCAGGTGTAGACTACAACGTTAATATCATCTCTGTGAAAGGCTTTGAAGAAAGCGAACCCATTTCTGGAATTCTGAAAACAG
Seq A exon
CTCTGGACAGCCCGTCAGGACTGGTAGTGATGAACATTACAGACTCGGAGGCTCTGGCAACCTGGCAGCCTGCAATTGCAGCTGTGGATAATTACATTGTCTCCTACTCTTCTGAGGATG
Seq C2 exon
AGCCAGAAGTTACACAGATGGTATCAGGAAACACAGTGGAGTACGACCTGAATGGCCTTCGACCTGCGACAGAGTACACCCTGAGGGTGCATGCAGTGAAGGATGCGCAGAAGAGCGAGACCCTCTCCACCCAGTTCACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-'20-19,'20-18,21-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.265
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(50.0=81.6)
A:
PF0004116=fn3=PU(48.1=92.7)
C2:
PF0004116=fn3=PD(50.6=81.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGACAAGGACAAAGCTGG
R:
TAGTGAACTGGGTGGAGAGGG
Band lengths:
255-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]