BtaEX6036170 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000575 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr8:105982711-105986185:-
Coord C1 exon
chr8:105986066-105986185
Coord A exon
chr8:105983932-105984075
Coord C2 exon
chr8:105982711-105982841
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGTGTATATTTCCTGTATAGTGC
3' ss Score
6.77
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CTCTGGATGGCCCATCTAGCTTGGTGACAGCCAACATCACTGACTCAGAAGCCTTGGCCATGTGGCAGCCAGCCATCGCCCCTGTGGATAATTACGTCATCTCCTACACAGGGGAGAGAG
Seq A exon
TGCCAGAAATTACCCGCACGGTGTCCGGGAACACGGTGGAGTATGCACTGACCAATCTCGAGCCTGCCACAGAATACACGCTGAGGATCTTTGCAGAGAAAGGGCCCCAGAAGAGCTCAACCATCACCACCAAGTTCACCACAG
Seq C2 exon
ACCTCGATTCTCCAAGAGACTTCACTGCTACAGAGGTTCAGTCGGAAACTGCCCTCCTCACCTGGAGACCTCCCCGGGCATCTGTCACTGGTTACCTATTGGTGTATGAATCCGTGGATGGTACAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000575-'27-26,'27-25,28-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.102 C2=0.114
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(48.1=92.7)
A:
PF0004116=fn3=PD(50.6=81.6)
C2:
PF0004116=fn3=PU(52.6=93.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGATGGCCCATCTAGCT
R:
ACCATCCACGGATTCATACACC
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]