HsaEX7005572 @ hg38
Exon Skipping
Gene
ENSG00000041982 | TNC
Description
tenascin C [Source:HGNC Symbol;Acc:HGNC:5318]
Coordinates
chr9:115035204-115038380:-
Coord C1 exon
chr9:115038261-115038380
Coord A exon
chr9:115036098-115036241
Coord C2 exon
chr9:115035204-115035334
Length
144 bp
Sequences
Splice sites
3' ss Seq
TATGTGTATTTCATGTTTAGTGC
3' ss Score
7.43
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CTCTGGATGGCCCATCTGGCCTGGTGACAGCCAACATCACTGACTCAGAAGCCTTGGCCAGGTGGCAGCCAGCCATTGCCACTGTGGACAGTTATGTCATCTCCTACACAGGCGAGAAAG
Seq A exon
TGCCAGAAATTACACGCACGGTGTCCGGGAACACAGTGGAGTATGCTCTGACCGACCTCGAGCCTGCCACGGAATACACACTGAGAATCTTTGCAGAGAAAGGGCCCCAGAAGAGCTCAACCATCACTGCCAAGTTCACAACAG
Seq C2 exon
ACCTCGATTCTCCAAGAGACTTGACTGCTACTGAGGTTCAGTCGGAAACTGCCCTCCTTACCTGGCGACCCCCCCGGGCATCAGTCACCGGTTACCTGCTGGTCTATGAATCAGTGGATGGCACAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041982-'39-48,'39-46,42-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=0.102 C2=0.113
Domain overlap (PFAM):
C1:
PF106044=Polyketide_cyc2=FE(24.1=100),PF0004116=fn3=PU(48.1=92.7)
A:
PF106044=Polyketide_cyc2=FE(28.9=100),PF0004116=fn3=PD(50.6=81.6)
C2:
PF106044=Polyketide_cyc2=PD(23.2=64.4),PF0004116=fn3=PU(53.2=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGATGGCCCATCTGG
R:
CTTGACTGTGCCATCCACTGA
Band lengths:
251-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains