RnoEX0092221 @ rn6
Exon Skipping
Gene
ENSRNOG00000058645 | Tnc
Description
tenascin C [Source:RGD Symbol;Acc:621057]
Coordinates
chr5:79799944-79802983:-
Coord C1 exon
chr5:79802864-79802983
Coord A exon
chr5:79800812-79800955
Coord C2 exon
chr5:79799944-79800074
Length
144 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGTGTTTTATACTAGTGC
3' ss Score
7.24
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
CTCTCGATGGTCCATCTGGCCTTCTGACAGCCAACATCACAGACTCAGAAGCCTTGGCCATGTGGCAGCCAGCCATTGCCACTGTAGACAGTTATGTCATCTCCTACACAGGGGAGAGAG
Seq A exon
TGCCAGAAATTACCCGCACAGTGTCTGGGAATACAGTGGAGTTTGAACTACATGACCTGGAGCCTGCCACAGAGTACACACTGAGTGTCTTTGCAGAGAAAGGTCACCAGAAGAGTTCTACCATCGCTACGAAATTTACCACAG
Seq C2 exon
ACCTGGATTCCCCAAGAGAATTGACTGCTACTGAGGTTCAGTCAGAAACTGCCCTCCTCACCTGGAGACCTCCCCGGGCATCGGTCACTGGATACCTCCTGGTCTATGAGTCTGTGGATGGTACAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058645-'32-46,'32-44,33-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.114
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(48.1=92.7)
A:
PF0004116=fn3=PD(50.6=81.6)
C2:
PF0004116=fn3=PU(52.6=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTCCATCTGGCCTTCTGA
R:
TGACTGTACCATCCACAGACTCA
Band lengths:
243-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]