DreEX6011165 @ danRer10
Exon Skipping
Gene
ENSDARG00000021948 | tnc
Description
tenascin C [Source:ZFIN;Acc:ZDB-GENE-980526-104]
Coordinates
chr5:27968107-27971099:-
Coord C1 exon
chr5:27970980-27971099
Coord A exon
chr5:27970756-27970899
Coord C2 exon
chr5:27968107-27968237
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTGTTGTTTGTCAGTGG
3' ss Score
7.52
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTGGATAAACCTCGAGGCCTGACAGCAGTGAACATCAGCGACACTGAAGCCCTGCTGTTGTGGCAGCCGTCCATCGCCACTGTAGACGGATATGTGATCACATACAGCGCAGACAGTG
Seq A exon
TGGCTCCGGTGATGGAAAGGGTGTCTGGGAACACGGTGGAGTTTGAGATGAGCTCCCTCACTCCTGCTACTTTATACACTGTTAAAGTCTATGCATTCCGAGACACAGCCAAGAGTGCGGCAACCAGCACTGACTTCACTACAG
Seq C2 exon
ATGTTGATGCCCCTCAGAATCTGGCCGCCAGTAACATTCAAACAGAGACCGCCATGTTGACGTGGAAGCCGCCAAGAGCAGACATCAGTGGGTACATCCTTAGCTTTGAGTCCGCTGATGGTGTAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021948-'22-28,'22-27,23-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.041 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(47.5=92.7)
A:
PF0004116=fn3=PD(51.2=83.7)
C2:
PF0004116=fn3=PU(52.6=93.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATAAACCTCGAGGCCTGA
R:
ACTACACCATCAGCGGACTCA
Band lengths:
244-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]