GgaEX6014931 @ galGal4
Exon Skipping
Gene
ENSGALG00000007113 | TNC
Description
tenascin precursor [Source:RefSeq peptide;Acc:NP_990787]
Coordinates
chr17:2646699-2647736:-
Coord C1 exon
chr17:2647617-2647736
Coord A exon
chr17:2647132-2647275
Coord C2 exon
chr17:2646699-2646829
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTCTTTTCTTCTTAGAGC
3' ss Score
10.51
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
CTCTGGACAGCCCGTCAGGACTGGTAGTGATGAACATTACAGACTCGGAGGCTCTGGCAACCTGGCAGCCTGCAATTGCAGCTGTGGATAATTACATTGTCTCCTACTCTTCTGAGGATG
Seq A exon
AGCCAGAAGTTACACAGATGGTATCAGGAAACACAGTGGAGTACGACCTGAATGGCCTTCGACCTGCGACAGAGTACACCCTGAGGGTGCATGCAGTGAAGGATGCGCAGAAGAGCGAGACCCTCTCCACCCAGTTCACTACAG
Seq C2 exon
GACTCGATGCTCCAAAAGATTTAAGTGCTACCGAGGTTCAGTCAGAAACAGCTGTGATAACGTGGAGGCCTCCACGTGCTCCTGTCACTGATTACCTCCTGACCTACGAGTCCATTGATGGCAGAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007113-'28-27,'28-25,29-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.265 C2=0.136
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(48.1=92.7)
A:
PF0004116=fn3=PD(50.6=81.6)
C2:
PF0004116=fn3=PU(52.6=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCCGTCAGGACTGGTA
R:
CATCAATGGACTCGTAGGTCAGG
Band lengths:
234-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]