MmuEX6093960 @ mm10
Exon Skipping
Gene
ENSMUSG00000028364 | Tnc
Description
tenascin C [Source:MGI Symbol;Acc:MGI:101922]
Coordinates
chr4:63970314-63972797:-
Coord C1 exon
chr4:63972678-63972797
Coord A exon
chr4:63971158-63971301
Coord C2 exon
chr4:63970314-63970444
Length
144 bp
Sequences
Splice sites
3' ss Seq
CGTGTGTGTTTCATACTTAGTGC
3' ss Score
7.95
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
CTCTGGATGGTCCATCTGGTCTTCTGATAGCCAACATCACAGACTCAGAAGCCTTGGCCATGTGGCAGCCAGCCATTGCCACTGTGGACAGTTATGTCATCTCCTACACAGGGGAGAGAG
Seq A exon
TGCCAGAAGTTACACGCACAGTGTCTGGAAATACAGTGGAGTACGAGCTGCATGACCTGGAGCCTGCCACAGAGTACATCCTGAGTATCTTTGCAGAGAAAGGACAGCAGAAGAGCTCTACCATCGCCACCAAGTTTACCACAG
Seq C2 exon
ACCTCGATTCCCCAAGAGAATTTACAGCTACAGAGGTTCAGTCAGAAACTGCCCTCCTTACCTGGAGACCTCCCCGAGCATCGGTCACTGGATACCTCCTGGTCTATGAATCTGTGGATGGTACAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028364-'36-43,'36-40,37-43
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.204 C2=0.068
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(48.1=92.7)
A:
PF0004116=fn3=PD(50.6=81.6)
C2:
PF0004116=fn3=PU(52.6=93.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGTCCATCTGGTCTTCT
R:
TGACTGTACCATCCACAGATTCA
Band lengths:
246-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types